Browse Element(s) Details


OsAffx.3776.1.S1_at

Description tigr:9632.m01123
TID=OsAffx.3776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pumilio-family RNA binding repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1248011/11pumilio/Puf RNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12440Os.1189.1.S1_at1/114+6853863..6858147retrotransposon protein, putative, unclassified
LOC_Os04g12450NANA4+6859876..6860172hypothetical protein
LOC_Os04g12460OsAffx.13983.1.S1_at11/114+6870603..6873995Leucine Rich Repeat family protein, expressed
LOC_Os04g12470Os.50274.1.S1_a_at1/114+6875001..6875929NA
LOC_Os04g12480Os.14949.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12480OsAffx.3776.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12490NANA4+6890584..6891322retrotransposon protein, putative, unclassified
LOC_Os04g12499Os.27591.1.A1_at11/114+6893080..6894617amino acid transporter family protein, putative, expressed
LOC_Os04g12508NANA4+6895066..6895785amino acid transporter family protein, putative
LOC_Os04g12520Os.41695.15.S1_s_at11/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.5.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.2.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.3.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.4.S1_x_at1/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12530OsAffx.3777.1.S1_at10/114+6904831..6906793amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3776.1.S1_at--459--3131Chr04:6884601..6884625 (25 bp)
AATTTATCCGCTTTGCACTCACCAA
LOC_Os04g12480
OsAffx.3776.1.S1_at--443--8071Chr04:6884469..6884493 (25 bp)
GGAGCATTGCCATAATCCAGCAACT
LOC_Os04g12480
OsAffx.3776.1.S1_at--102--51Chr04:6884423..6884447 (25 bp)
ATTGTCGAACGTGCTTTTGATTTGA
LOC_Os04g12480
OsAffx.3776.1.S1_at--847--2171Chr04:6883756..6883779 (24 bp)
ACACGTCTTAGAACATGGTAGGCCA
LOC_Os04g12480
OsAffx.3776.1.S1_at--176--10111Chr04:6883738..6883762 (25 bp)
TAGGCCAGAGGAGCGGTCATCCATT
LOC_Os04g12480
OsAffx.3776.1.S1_at--702--4671Chr04:6883726..6883750 (25 bp)
GCGGTCATCCATTATTCAAAAGCTT
LOC_Os04g12480
OsAffx.3776.1.S1_at--944--1551Chr04:6883706..6883730 (25 bp)
AGCTTTCTGGGCAAGTGGTGAACTT
LOC_Os04g12480
OsAffx.3776.1.S1_at--167--2331Chr04:6883648..6883672 (25 bp)
AAAGTGTCTATCTTTTGGAACTCCT
LOC_Os04g12480
OsAffx.3776.1.S1_at--530--6051Chr04:6883599..6883623 (25 bp)
GAGATTGTATCCTCTGGCCAAACAT
LOC_Os04g12480
OsAffx.3776.1.S1_at--441--8451Chr04:6883282..6883609 (25 bp)
TGGCCAAACATTCCAGGGACTGATG
LOC_Os04g12480
OsAffx.3776.1.S1_at--406--2031Chr04:6882983..6883007 (25 bp)
ACTAGCCAATGTCAGCAGTCACTAA
LOC_Os04g12480
Target Sequence 
AATTTATCCGCTTTGCACTCACCAATATGGCTGCAGAGTTATTCAGAGAGTTTTGGAGCATTGCCATAATCCAGCAACTC
AAAGTGCTGTGATGGATGAAATTGTCGAACGTGCTTTTGATTTGACAGAAGATAAATTTGGAAACTATGTTGTTCAACAC
GTCTTAGAACATGGTAGGCCAGAGGAGCGGTCATCCATTATTCAAAAGCTTTCTGGGCAAGTGGTGAACTTGAGCCAGCA
GAAGTATGCTTCTAATGTTGTGGAAAAGTGTCTATCTTTTGGAACTCCTGATGAACGTGAAGGCCTTATAAGAGAGATTG
TATCCTCTGGCCAAACATTCCAGGGACTGATGAAGGATCAGTTTGGCAATTATGTTGTACAGAGAATCCTTCAGACATGT
GATGACAAATTCCTAGTTGTGATCCTCTCAAGCATCAAGATGCATTTGAACGAACTGAAGAACTACACTTTCGGGAAGCA
TATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGAAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGC
AGTCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis