Browse Element(s) Details


OsAffx.3777.1.S1_at

Description tigr:9632.m01128
TID=OsAffx.3777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1253010/11amino acid transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12480Os.14949.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12480OsAffx.3776.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12490NANA4+6890584..6891322retrotransposon protein, putative, unclassified
LOC_Os04g12499Os.27591.1.A1_at11/114+6893080..6894617amino acid transporter family protein, putative, expressed
LOC_Os04g12508NANA4+6895066..6895785amino acid transporter family protein, putative
LOC_Os04g12520Os.41695.15.S1_s_at11/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.5.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.2.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.3.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.4.S1_x_at1/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12530OsAffx.3777.1.S1_at10/114+6904831..6906793amino acid transporter family protein, putative
LOC_Os04g12540OsAffx.26000.1.S1_at11/114+6918914..6922552D-mannose binding lectin family protein, expressed
LOC_Os04g12550NANA4+6931177..6931713hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3777.1.S1_at--299--9451Chr04:6906649..6906673 (25 bp)
TCGGACTCGTCGTCTTCGTGCGGTA
LOC_Os04g12530
OsAffx.3777.1.S1_at--524--291Chr04:6906564..6906588 (25 bp)
ATACGCAGCAGTGGCCTCAGAGCTA
LOC_Os04g12530
OsAffx.3777.1.S1_at--572--3751NONE
CTCAGAGCTACAGGCAGTCGATTGA
NONE
OsAffx.3777.1.S1_at--569--8751Chr04:6905171..6905195 (25 bp)
TGTACAGTAGCGTGCAATCCCCGAA
LOC_Os04g12530
OsAffx.3777.1.S1_at--976--1671Chr04:6905118..6905142 (25 bp)
AGCCGTCTATCAAACTCATTCCTGA
LOC_Os04g12530
OsAffx.3777.1.S1_at--161--2491Chr04:6904994..6905018 (25 bp)
AACAGCAGCACGAAGATGGCCGGAA
LOC_Os04g12530
OsAffx.3777.1.S1_at--569--871Chr04:6904979..6905003 (25 bp)
ATGGCCGGAAGAGCTCGCAGTACCT
LOC_Os04g12530
OsAffx.3777.1.S1_at--1102--6351Chr04:6904921..6904945 (25 bp)
GATCCCCGAGGATCAGAAGCCGCTG
LOC_Os04g12530
OsAffx.3777.1.S1_at--843--9631Chr04:6904909..6904933 (25 bp)
TCAGAAGCCGCTGGTGGTTGGACAC
LOC_Os04g12530
OsAffx.3777.1.S1_at--1041--10751Chr04:6904892..6904916 (25 bp)
TTGGACACCACGAGGTTGGGCCCTA
LOC_Os04g12530
OsAffx.3777.1.S1_at--432--7331Chr04:6904861..6904885 (25 bp)
GTGCACCTACACTCAGGGCGTCTTG
LOC_Os04g12530
Target Sequence 
TCGGACTCGTCGTCTTCGTGCGGTACCCCGCGGGTCGCCGCCGCCGGCGGTGGCGGTGGCGGCCGCGGCAGCCAGCCCAG
CTCCTATACGCAGCAGTGGCCTCAGAGCTACAGGCAGTCGATTGACATGTACAGTAGCGTGCAATCCCCGAACCTGAGCT
TCCTGGGCACTCCGACGCTGAGCCGTCTATCAAACTCATTCCTGACCGCCTCGTTCCGGGGAAAGCCGCCGGAGATCATC
TCCGGGCTCATCAAGCCACTGCTGCCGACGACGGCGGCGGCCGACGACGAAGGTGACCGCCGGCAACAGCAGCACGAAGA
TGGCCGGAAGAGCTCGCAGTACCTCCTGCCGCCGAGGAGGCCGTCGTCTCTGCAGAAGATCCCCGAGGATCAGAAGCCGC
TGGTGGTTGGACACCACGAGGTTGGGCCCTACCGGCAGTGCACCTACACTCAGGGCGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis