Browse Element(s) Details


Os.14949.1.S1_at

Description gb:C98156
DB_XREF= gi:3760902
DB_XREF=C98156
CLONE=C0820_6Z
TID=Os.14949.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14949 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T04242 (A.thaliana) T04242 abdominal segment formation protein pumilio homolog F14M19.160 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1248011/11pumilio/Puf RNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12440Os.1189.1.S1_at1/114+6853863..6858147retrotransposon protein, putative, unclassified
LOC_Os04g12450NANA4+6859876..6860172hypothetical protein
LOC_Os04g12460OsAffx.13983.1.S1_at11/114+6870603..6873995Leucine Rich Repeat family protein, expressed
LOC_Os04g12470Os.50274.1.S1_a_at1/114+6875001..6875929NA
LOC_Os04g12480Os.14949.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12480OsAffx.3776.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12490NANA4+6890584..6891322retrotransposon protein, putative, unclassified
LOC_Os04g12499Os.27591.1.A1_at11/114+6893080..6894617amino acid transporter family protein, putative, expressed
LOC_Os04g12508NANA4+6895066..6895785amino acid transporter family protein, putative
LOC_Os04g12520Os.41695.15.S1_s_at11/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.5.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.2.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.3.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.4.S1_x_at1/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12530OsAffx.3777.1.S1_at10/114+6904831..6906793amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14949.1.S1_at--967--4831Chr04:6882941..6882965 (25 bp)
GCTAATCCTTTTTAAGCATTGGCAT
LOC_Os04g12480
Os.14949.1.S1_at--736--9271Chr04:6882841..6882865 (25 bp)
TCCTGGTGGAGACTGGATGTGTTCT
LOC_Os04g12480
Os.14949.1.S1_at--465--10471Chr04:6882808..6882832 (25 bp)
TTACTGTGGCCTGTATAGATCTCTC
LOC_Os04g12480
Os.14949.1.S1_at--1043--8451Chr04:6882802..6882826 (25 bp)
TGGCCTGTATAGATCTCTCCGGGTA
LOC_Os04g12480
Os.14949.1.S1_at--650--6851Chr04:6882796..6882820 (25 bp)
GTATAGATCTCTCCGGGTACTTAAA
LOC_Os04g12480
Os.14949.1.S1_at--126--711Chr04:6882761..6882785 (25 bp)
ATGAGTGTTAGGTATCGCCGCTGTA
LOC_Os04g12480
Os.14949.1.S1_at--418--6911Chr04:6882750..6882774 (25 bp)
GTATCGCCGCTGTAAATCTGTTTTT
LOC_Os04g12480
Os.14949.1.S1_at--1070--531Chr04:6882748..6882772 (25 bp)
ATCGCCGCTGTAAATCTGTTTTTTG
LOC_Os04g12480
Os.14949.1.S1_at--1017--3851Chr04:6882733..6882757 (25 bp)
CTGTTTTTTGGCCATGTACAAGTTT
LOC_Os04g12480
Os.14949.1.S1_at--875--751Chr04:6882720..6882744 (25 bp)
ATGTACAAGTTTACTGATGGGTATC
LOC_Os04g12480
Os.14949.1.S1_at--879--6251Chr04:6882705..6882729 (25 bp)
GATGGGTATCAGCTGTACATTTGTT
LOC_Os04g12480
Target Sequence 
GCTAATCCTTTTTAAGCATTGGCATCANTAAGNAAATCTGGTGAATTGACAANTGTGGAGATTTTTGTTTTGAGATACNC
TGTAATAGCCANTAGGGGTGTCCTGGTGGAGACTGGATGTGTTCTCTTCTTTTTTACTGTGGCCTGTATAGATCTCTCCG
GGTACTTAAAAGGTAATTAGATGAGTGTTAGGTATCGCCGCTGTAAATCTGTTTTTTGGCCATGTACAAGTTTACTGATG
GGTATCAGCTGTACATTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis