Browse Element(s) Details


Os.1189.1.S1_at

Description gb:AB041838.1
DB_XREF= gi:11094204
GEN=Hd1
TID=Os.1189.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1189 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for Hd1, complete cds.
PROD=Hd1
FL= gb:AB041838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1637011/11Hd1, putative, expressed
LOC_Os04g124401/11retrotransposon protein, putative, unclassified
LOC_Os04g263401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1189.1.S1_at--1142--6572Chr09:19485687..19485825 (25 bp)
GATTCCATCAGCAACAGCATATCTT
NONE
Os.1189.1.S1_at--226--251Chr06:9337001..9337025 (25 bp)
ATATCTTTCTCATCAATGGAGGCGG
LOC_Os06g16370
Os.1189.1.S1_at--177--2251Chr06:9337060..9337084 (25 bp)
AAATTCCAGAATCCTGACACCTGCT
LOC_Os06g16370
Os.1189.1.S1_at--518--8071Chr06:9337085..9337109 (25 bp)
GGAGCAATCAATCTCTTCTCAGGTC
LOC_Os06g16370
Os.1189.1.S1_at--785--10513Chr06:9337128..9337152 (25 bp)
TTCACTTCAGCTCCATGGACAGGGA
LOC_Os06g16370
Os.1189.1.S1_at--963--8411Chr06:9337259..9337283 (25 bp)
GGCCGTTTCGCCAAGAGATCAGATG
LOC_Os06g16370
Os.1189.1.S1_at--793--1971Chr06:9337313..9337337 (25 bp)
ACTGCAGCTCTATCTGACGGTAGCT
LOC_Os06g16370
Os.1189.1.S1_at--724--5751Chr06:9337328..9337352 (25 bp)
GACGGTAGCTATGGTACTGTTCCAT
LOC_Os06g16370
Os.1189.1.S1_at--1156--9911Chr06:9337342..9337366 (25 bp)
TACTGTTCCATGGTTCTGATGGGAC
LOC_Os06g16370
Os.1189.1.S1_at--622--7631Chr06:9337362..9337386 (25 bp)
GGGACTCATGAGACGCTATCTTATA
LOC_Os06g16370
Os.1189.1.S1_at--221--6811Chr06:9337517..9337541 (25 bp)
GTTTTGCTTTGTAATTTCCGGATAG
LOC_Os06g16370
Target Sequence 
GATTCCATCAGCAACAGCATATCTTTCTCATCAATGGAGGCGGGTATAGTACCAGACAGCACGGTGATAGATATGCCAAA
TTCCAGAATCCTGACACCTGCTGGAGCAATCAATCTCTTCTCAGGTCCCTCGCTTCAGATGTCCCTTCACTTCAGCTCCA
TGGACAGGGAGGCCAGGGTGCTCAGGTACAGGGAGAAGAAGAAGGCCAGGAAGTTTGAGAAGACAATACGTTATGAAACA
AGAAAGGCGTATGCAGAGGCACGACCCCNGGATCAAGGGCCGTTTCGCCAAGAGATCAGATGTGCAGATCGAAGTGGACC
AGATGTTCTCCACTGCAGCTCTATCTGACGGTAGCTATGGTACTGTTCCATGGTTCTGATGGGACTCATGAGACGCTATC
TTATAGGCATATATATGGGGACTTACTGAGTAGCAATAACNTCGATCCNGTGGGAGTAGTTCTAGACANATCTGTGTTAT
GAATAATAGTGTGTTGTTTGCGACTTAAAATTGATCAAGTACCTTAGCTTTTTAAAGTTTTGCTTTGTAATTTCCGGATA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis