Browse Element(s) Details


Os.44686.2.S1_x_at

Description gb:NM_185801.1
DB_XREF= gi:34898687
GEN=P0676F10.33
TID=Os.44686.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44686 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative curly leaf protein (P0676F10.33), mRNA.
PROD=putative curly leaf protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1639011/11Polycomb protein EZ1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44686.2.S1_x_at--520--7271Chr06:9358610..9358634 (25 bp)
GTCCATGCTTTGCTGCTGACAGGGA
LOC_Os06g16390
Os.44686.2.S1_x_at--911--7371Chr06:9359505..9359529 (25 bp)
GTGATGGTACATTGGGAGTCCCTAA
LOC_Os06g16390
Os.44686.2.S1_x_at--329--591Chr06:9359551..9359575 (25 bp)
ATGCCGGAACATGAAACTGCTGCTT
LOC_Os06g16390
Os.44686.2.S1_x_at--103--7651Chr06:9360094..9360196 (25 bp)
GGGAGCTTTCCTCAAGAATAGTGTT
LOC_Os06g16390
Os.44686.2.S1_x_at--162--5391Chr06:9360199..9360223 (25 bp)
GAAGCACGAGTATCTTGGCGAGTAC
LOC_Os06g16390
Os.44686.2.S1_x_at--449--5211Chr06:9360283..9360307 (25 bp)
GAATTCATCGTTCCTTTTCAACTTG
LOC_Os06g16390
Os.44686.2.S1_x_at--37--711Chr06:9360539..9360560 (22 bp)
ATGAGTACGTTCTTGATGCCTACAG
LOC_Os06g16390
Os.44686.2.S1_x_at--658--5611Chr06:9360568..9360592 (25 bp)
GACAAGCTGAAGTTCGCCAACCATT
LOC_Os06g16390
Os.44686.2.S1_x_at--628--3831Chr06:9360606..9360630 (25 bp)
CTGCTACGCCAAGGTCATCATGGTA
LOC_Os06g16390
Os.44686.2.S1_x_at--694--7131Chr06:9360619..9360643 (25 bp)
GTCATCATGGTAGCAGGCGATCACA
LOC_Os06g16390
Os.44686.2.S1_x_at--1017--8371Chr06:9360679..9360703 (25 bp)
GGCGAGGAGCTGTTCTACGACTACC
LOC_Os06g16390
Target Sequence 
GTCCATGCTTTGCTGCTGACAGGGAATGTGATCCTGATGTGTGTAGAAACTGCTGGGTAGGGTGCGGTGATGGTACATTG
GGAGTCCCTAACCAAAGAGGTGATAATTATGAATGCCGGAACATGAAACTGCTGCTTAAACAGCAACAAAGGGTCTTACT
TGGGAGATCTGATGTTTCTGGCTGGGGAGCTTTCCTCAAGAATAGTGTTGGGAAGCACGAGTATCTTGGCGAGTACACTG
GGGAGCTTATCTCCCATAAAGAAGCTGACAAGCGTGGAAAGATATATGACCGTGAGAATTCATCGTTCCTTTTCAACTTG
AACAATGAGTACGTTCTTGATGCCTACAGAATGGGCGACAAGCTGAAGTTCGCCAACCATTCCCCTGATCCAAACTGCTA
CGCCAAGGTCATCATGGTAGCAGGCGATCACAGGGTGGGGATCTTCGCCAAAGAGCGGATCAGCGCGGGCGAGGAGCTGT
TCTACGACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44686.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis