Browse Element(s) Details


Os.27109.2.S1_x_at

Description gb:NM_185803.1
DB_XREF= gi:34898691
GEN=P0038C05.19
TID=Os.27109.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0038C05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0038C05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1641011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27109.2.S1_x_at--792--391Chr06:9368121..9368145 (25 bp)
ATCAGAGGAGCAACGGCGCCCCAAG
LOC_Os06g16410
Os.27109.2.S1_x_at--1115--2551Chr06:9368110..9368134 (25 bp)
AACGGCGCCCCAAGAAGAAGAACAT
LOC_Os06g16410
Os.27109.2.S1_x_at--610--1451Chr06:9368098..9368122 (25 bp)
AGAAGAAGAACATCCTCCGGCGCCT
LOC_Os06g16410
Os.27109.2.S1_x_at--502--2151Chr06:9368062..9368086 (25 bp)
ACACCGGGCGGGTGCACGACAACAA
LOC_Os06g16410
Os.27109.2.S1_x_at--177--7331Chr06:9368051..9368075 (25 bp)
GTGCACGACAACAACCGGAAGCCGC
LOC_Os06g16410
Os.27109.2.S1_x_at--1114--4391Chr06:9367970..9367994 (25 bp)
GCCACCACGTTCTGCCTGGCGGAGG
LOC_Os06g16410
Os.27109.2.S1_x_at--461--7191Chr06:9367925..9367949 (25 bp)
GTCGGCGTCCTCGAGAGCAACGAGA
LOC_Os06g16410
Os.27109.2.S1_x_at--961--4571Chr06:9367871..9367895 (25 bp)
GCGCTCTGCACGCTCATGGACGACG
LOC_Os06g16410
Os.27109.2.S1_x_at--787--8051Chr06:9367710..9367734 (25 bp)
GGAGAGGTTCCTGGCGCACGGCGGC
LOC_Os06g16410
Os.27109.2.S1_x_at--374--4571Chr06:9367642..9367666 (25 bp)
GCGCGCTGGTGAGCGCGTTCCACAA
LOC_Os06g16410
Os.27109.2.S1_x_at--465--4231Chr06:9367591..9367615 (25 bp)
CCGAGAGCGTGCTCCGGAGCCTGCA
LOC_Os06g16410
Target Sequence 
ATCAGAGGAGCAACGGCGCCCCAAGAAGAAGAACATCCTCCGGCGCCTGCGCGACGCGCACACCGGGCGGGTGCACGACA
ACAACCGGAAGCCGCCACCGCCGCCGGCGCAGGGACGCCTCTGCCCGGTGCACCGCGGCGTGTGCTCCCCGGCCACCACG
TTCTGCCTGGCGGAGGCCGGCGCGGTGGAGGCCCTCGTCGGCGTCCTCGAGAGCAACGAGAACGGCCGCGTGGTCGACGC
CGTGCTGGGCGCGCTCTGCACGCTCATGGACGACGCCGTCGACGTGGAACGCGGCGTGGCCGTGCTCGCCGAGCACGACG
CCGCGCGGCACGTCCTGCGCGCGCTGCGGCAGCACCGTGACGTCGGCGGCGACACCGCCGGCGCGGTGTCGCGGCGCTGC
TTCTGGGCCGTGGAGAGGTTCCTGGCGCACGGCGGCGAGCGGTGCGTGCGCGACGTGACGGCGGACCGCGCGCTGCCGAG
CGCGCTGGTGAGCGCGTTCCACAAGGGCGACGCCGCGACGAAGCAGGTCGCCGAGAGCGTGCTCCGGAGCCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27109.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis