Browse Element(s) Details


Os.44686.1.S1_at

Description gb:AK111743.1
DB_XREF= gi:37988406
TID=Os.44686.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative curly leaf protein (P0676F10.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052J10, full insert sequence.
FL= gb:AK111743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g163909/11Polycomb protein EZ1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44686.1.S1_at--82--5351Chr06:9360827..9360851 (25 bp)
GAAGATCAGCCGTTGATTCTTTTGT
LOC_Os06g16390
Os.44686.1.S1_at--1103--111Chr06:9360842..9360866 (25 bp)
ATTCTTTTGTTGTCTTGGTTGATTC
LOC_Os06g16390
Os.44686.1.S1_at--821--10831Chr06:9360856..9360880 (25 bp)
TTGGTTGATTCTTTCGTTATTGGTG
LOC_Os06g16390
Os.44686.1.S1_at--926--7591Chr06:9360884..9360908 (25 bp)
GGGACCGAGAACTCTGACGGTGATT
LOC_Os06g16390
Os.44686.1.S1_at--865--2531Chr06:9360893..9360917 (25 bp)
AACTCTGACGGTGATTAGCGCCGTA
LOC_Os06g16390
Os.44686.1.S1_at--278--8771Chr06:9360904..9360928 (25 bp)
TGATTAGCGCCGTAAGGAAAACTTT
LOC_Os06g16390
Os.44686.1.S1_at--53--5511Chr06:9360919..9360943 (25 bp)
GGAAAACTTTCCTGCCATTCGTTGG
LOC_Os06g16390
Os.44686.1.S1_at--1104--6571Chr06:9360951..9360975 (25 bp)
GATTCGATTCGTTGATTTTCCCTGA
LOC_Os06g16390
Os.44686.1.S1_at--652--10391Chr06:9360966..9360990 (25 bp)
TTTTCCCTGAATTCTGTAACTGCTG
LOC_Os06g16390
Os.44686.1.S1_at--236--8751NONE
TGTAACTGCTGCACCTGTCGCCTGT
NONE
Os.44686.1.S1_at--316--3871NONE
CTGTCGCCTGTTCAACTTCAAAAGA
NONE
Target Sequence 
GAAGATCAGCCGTTGATTCTTTTGTTGTCTTGGTTGATTCTTTCGTTATTGGTGAGGGGGACCGAGAACTCTGACGGTGA
TTAGCGCCGTAAGGAAAACTTTCCTGCCATTCGTTGGCCCCCTCGATTCGATTCGTTGATTTTCCCTGAATTCTGTAACT
GCTGCACCTGTCGCCTGTTCAACTTCAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis