CREP Browser

Description

gb:AK103853.1
DB_XREF= gi:32989062
TID=Os.32526.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0038C05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148M07, full insert sequence.
FL= gb:AK103853.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16400	7/11	Helix-loop-helix DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16380	NA	NA	6	+	9348328..9349580	hypothetical protein
LOC_Os06g16390	Os.44686.2.S1_x_at	11/11	6	+	9352714..9361033	Polycomb protein EZ1, putative, expressed
LOC_Os06g16390	Os.44686.1.S1_at	9/11	6	+	9352714..9361033	Polycomb protein EZ1, putative, expressed
LOC_Os06g16400	Os.32526.2.S1_x_at	11/11	6	+	9363071..9366998	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400	Os.47378.1.S1_s_at	11/11	6	+	9363071..9366998	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400	Os.32526.1.S1_at	7/11	6	+	9363071..9366998	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410	Os.27109.1.S1_at	11/11	6	+	9367200..9370952	U-box domain containing protein, expressed
LOC_Os06g16410	Os.27109.2.S1_x_at	11/11	6	+	9367200..9370952	U-box domain containing protein, expressed

Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32526.1.S1_at--1088--901	1	NONE	TGCAACGGGTGCCTATTGGCACAGA	NONE
Os.32526.1.S1_at--881--515	1	NONE	GCAACGGGTGCCTATTGGCACAGAT	NONE
Os.32526.1.S1_at--23--193	1	NONE	ACGGGTGCCTATTGGCACAGATGTT	NONE
Os.32526.1.S1_at--1078--917	1	NONE	TGCCTATTGGCACAGATGTTTTTAT	NONE
Os.32526.1.S1_at--448--369	1	Chr06:9366930..9366953 (24 bp)	CTATTGGCACAGATGTTTTTATTCC	LOC_Os06g16400
Os.32526.1.S1_at--204--825	1	Chr06:9366934..9366958 (25 bp)	GGCACAGATGTTTTTATTCCAGCAA	LOC_Os06g16400
Os.32526.1.S1_at--119--513	1	Chr06:9366935..9366959 (25 bp)	GCACAGATGTTTTTATTCCAGCAAA	LOC_Os06g16400
Os.32526.1.S1_at--193--331	1	Chr06:9366936..9366960 (25 bp)	CACAGATGTTTTTATTCCAGCAAAG	LOC_Os06g16400
Os.32526.1.S1_at--265--131	1	Chr06:9366939..9366963 (25 bp)	AGATGTTTTTATTCCAGCAAAGCTG	LOC_Os06g16400
Os.32526.1.S1_at--687--921	1	Chr06:9366951..9366975 (25 bp)	TCCAGCAAAGCTGTGAATTCTGAAA	LOC_Os06g16400
Os.32526.1.S1_at--689--235	1	Chr06:9366957..9366981 (25 bp)	AAAGCTGTGAATTCTGAAAGAGAAG	LOC_Os06g16400

Target Sequence

TGCAACGGGTGCCTATTGGCACAGATGTTTTTATTCCAGCAAAGCTGTGAATTCTGAAAGAGAAG

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details