Browse Element(s) Details


Os.47378.1.S1_s_at

Description gb:AK101279.1
DB_XREF= gi:32986488
TID=Os.47378.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033C13, full insert sequence.
FL= gb:AK101279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1640011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47378.1.S1_s_at--472--51Chr06:9366386..9366410 (25 bp)
ATTGATTCCACAACTGAAGCAAGAG
LOC_Os06g16400
Os.47378.1.S1_s_at--360--3111Chr06:9366414..9366438 (25 bp)
AATATGTGCCATGGGCTTTCAGCAA
LOC_Os06g16400
Os.47378.1.S1_s_at--399--6791Chr06:9366518..9366542 (25 bp)
GTTAGTGCTATTTTTCTCATGTTCA
LOC_Os06g16400
Os.47378.1.S1_s_at--641--10011Chr06:9366543..9366567 (25 bp)
TAGCAGCAATTGACCTCCTGTGGAA
LOC_Os06g16400
Os.47378.1.S1_s_at--116--5431Chr06:9366565..9366589 (25 bp)
GAAGCCTCTCTTTGGATGTTCCATT
LOC_Os06g16400
Os.47378.1.S1_s_at--462--991Chr06:9366623..9366647 (25 bp)
AGGATGTTCACATGGAGATCTCAAG
LOC_Os06g16400
Os.47378.1.S1_s_at--1099--2951Chr06:9366684..9366708 (25 bp)
AATGGCGAGAAGCTTCATTTTGCAA
LOC_Os06g16400
Os.47378.1.S1_s_at--159--9511Chr06:9366728..9366752 (25 bp)
TCTCGTCAACCCCAGGATTATTACA
LOC_Os06g16400
Os.47378.1.S1_s_at--368--6551Chr06:9366743..9366767 (25 bp)
GATTATTACATACACTAGCTAGCAT
LOC_Os06g16400
Os.47378.1.S1_s_at--640--9551Chr06:9366788..9366812 (25 bp)
TCTTTGTTGTACTTGCTTAGCCCAT
LOC_Os06g16400
Os.47378.1.S1_s_at--672--10831Chr06:9366888..9366912 (25 bp)
TTGGCCTGATGTAGCAAGCATTTGA
LOC_Os06g16400
Target Sequence 
ATTGATTCCACAACTGAAGCAAGAGATCAATATGTGCCATGGGCTTTCAGCAAAACTGTGATATATGAGCATGTTGATAT
CATGGTACTAGCTCACAGCTGATCACTGAAGTATAAGCATCCAAAATGCTTAGTTAGTGCTATTTTTCTCATGTTCATAG
CAGCAATTGACCTCCTGTGGAAGCCTCTCTTTGGATGTTCCATTTGCTGTTATAGAAAGTTGGGAGATAAAAAAAAAAGG
ATGTTCACATGGAGATCTCAAGCAATTTGTTCTCCACTGAAGTAGTNTACAGTCTTGAAATGGCGAGAAGCTTCATTTTG
CAAGAAGGTGATTTTTNTGTGGTCTCGTCAACCCCAGGATTATTACATACACTAGCTAGCATTGTGAGGCTACAGAAATT
GTTCTTTGTTGTACTTGCTTAGCCCATGTTCCATNTGACAAGCAACATAGGCAGAAATGCAGTCACTGATTTTGTATTTG
TTGAAAAAAAAAATAAATGGGCTTGGCCTGATGTAGCAAGCATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47378.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis