Browse Element(s) Details


Os.32526.2.S1_x_at

Description gb:NM_185802.1
DB_XREF= gi:34898689
GEN=P0038C05.18
TID=Os.32526.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0038C05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0038C05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1640011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32526.2.S1_x_at--795--9871Chr06:9364779..9364803 (25 bp)
TACATGTAAGAGCACGGCGCGGTCA
LOC_Os06g16400
Os.32526.2.S1_x_at--24--2411Chr06:9364810..9364834 (25 bp)
AAACAGCCATAGTCTTGCCGAAAGG
LOC_Os06g16400
Os.32526.2.S1_x_at--90--7971Chr06:9364964..9364988 (25 bp)
GGATCTTGTTCCTGGTTGTAGTAAA
LOC_Os06g16400
Os.32526.2.S1_x_at--1161--5391Chr06:9365249..9365273 (25 bp)
GAAGCTAGCAAGTGTCAATCCAACA
LOC_Os06g16400
Os.32526.2.S1_x_at--874--10371Chr06:9365393..9365417 (25 bp)
TTTTCAATGTCGAGGCACTACTGCA
LOC_Os06g16400
Os.32526.2.S1_x_at--915--10851Chr06:9365428..9365452 (25 bp)
TTGGCTTCTTCCCAGACATTGTTCA
LOC_Os06g16400
Os.32526.2.S1_x_at--386--1411Chr06:9365441..9365465 (25 bp)
AGACATTGTTCATCCCCGATTACAC
LOC_Os06g16400
Os.32526.2.S1_x_at--40--10851Chr06:9365485..9365509 (25 bp)
TTGGGATGCCCAGCATTGTGAACCC
LOC_Os06g16400
Os.32526.2.S1_x_at--1152--7351Chr06:9365502..9365526 (25 bp)
GTGAACCCCACTGATGCATTTGGAA
LOC_Os06g16400
Os.32526.2.S1_x_at--805--8191Chr06:9365523..9365547 (25 bp)
GGAAGAGTAATCCATGCTCCATTAG
LOC_Os06g16400
Os.32526.2.S1_x_at--806--8111Chr06:9366327..9366351 (25 bp)
GGACGTCATTGAGATGCCTTTTACT
LOC_Os06g16400
Target Sequence 
TACATGTAAGAGCACGGCGCGGTCAGGCTACAAACAGCCATAGTCTTGCCGAAAGGGTTAGGAGGGAGAAGATCAGTGAA
AGGATGAAATATCTTCAGGATCTTGTTCCTGGTTGTAGTAAAGTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAA
CTATGTTCAATCATTACAGAGGCAGGTTGAGTTTTTGTCGATGAAGCTAGCAAGTGTCAATCCAACACTGGACTTCAACA
TAGAACGCATTTTATCTAAAGATATTTTTCAATGTCGAGGCACTACTGCATCATCTGCCTTTGGCTTCTTCCCAGACATT
GTTCATCCCCGATTACACCCACCAAAATATACACAAGTTGGGATGCCCAGCATTGTGAACCCCACTGATGCATTTGGAAG
AGTAATCCATGCTCCATTAGGAACTAACAGTGCATTCAAAGAACCTAAACATCAGATGCCCAACAATTTGAATGGAGAGT
TCCAGGACGTCATTGAGATGCCTTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32526.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis