Browse Element(s) Details


Os.16952.1.S1_at

Description gb:AK120497.1
DB_XREF= gi:37990120
TID=Os.16952.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0038C05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121D24, full insert sequence.
FL= gb:AK120497.1 gb:AK099920.1 gb:AK066102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1642010/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16952.1.S1_at--211--9771Chr06:9397223..9397247 (25 bp)
TAATGACAGCGGTACTTCTCCTAGT
LOC_Os06g16420
Os.16952.1.S1_at--717--3811Chr06:9397240..9397264 (25 bp)
CTCCTAGTTATTTTCCTATCAGCGA
LOC_Os06g16420
Os.16952.1.S1_at--452--4591Chr06:9397261..9397285 (25 bp)
GCGAATTTCATTCCGAGCATCTGGG
LOC_Os06g16420
Os.16952.1.S1_at--769--8671Chr06:9397317..9397341 (25 bp)
TGTGTGTATCGCCTTCATTTTTCCA
LOC_Os06g16420
Os.16952.1.S1_at--399--10671NONE
TTCCAGCCGCGATCACTCTAAGGGA
NONE
Os.16952.1.S1_at--818--4271Chr06:9397654..9397678 (25 bp)
CCTGTCCATCTTCATGATTGTTCTT
LOC_Os06g16420
Os.16952.1.S1_at--670--6331Chr06:9397712..9397736 (25 bp)
GATGCATATTCAATGTTCCACAGGA
LOC_Os06g16420
Os.16952.1.S1_at--231--2831Chr06:9397738..9397762 (25 bp)
AAGTTCCCCTTCCATAGCCTGATAT
LOC_Os06g16420
Os.16952.1.S1_at--984--8471Chr06:9397776..9397800 (25 bp)
TGGCGAGTCAGTGGATTCTTTATCT
LOC_Os06g16420
Os.16952.1.S1_at--360--10371Chr06:9397875..9397899 (25 bp)
TTATTTGGCAAACAACCCTTGACTC
LOC_Os06g16420
Os.16952.1.S1_at--549--7251Chr06:9397947..9397971 (25 bp)
GTCCGAAGTGTTTTAGTCCAATGTA
LOC_Os06g16420
Target Sequence 
TAATGACAGCGGTACTTCTCCTAGTTATTTTCCTATCAGCGAATTTCATTCCGAGCATCTGGGATGCCTTCCAATTTACT
GGTGCAACTGCTGCTGTGTGTATCGCCTTCATTTTTCCAGCCGCGATCACTCTAAGGGATCCACACAGTATAGCAAAGAA
GTGGGACAAAATCCTGTCCATCTTCATGATTGTTCTTGCAATTGTATCAAACGTAGTAGCTGTGTATAGCGATGCATATT
CAATGTTCCACAGGAAAAGTTCCCCTTCCATAGCCTGATATTCCAAAATCCTATTGGCGAGTCAGTGGATTCTTTATCTG
AAAGATGGCTTGTACATTAGCTAGCAAATAAAATCATTATTTAGGCAAGTATTTACGGGATTTATTTTACGGTTTATTTG
GCAAACAACCCTTGACTCAATTATGTTGAGTTGGATGTATCTATAGGATGGGTGTGTAAACTTTGGTCCGAAGTGTTTTA
GTCCAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis