Browse Element(s) Details


OsAffx.27667.1.S1_s_at

Description gb:NM_185812.1
DB_XREF= gi:34898709
GEN=P0038C05.28
TID=OsAffx.27667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0038C05.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed
LOC_Os06g16460OsAffx.15459.1.S1_at11/116+9427383..9428032hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27667.1.S1_s_at--267--10551Chr06:9410702..9410726 (25 bp)
TTCTTCGTGCCAAAGAGGTGGGTTC
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--765--3271Chr06:9410692..9410716 (25 bp)
CAAAGAGGTGGGTTCAAGTTCGCCG
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--978--5991Chr06:9410639..9410663 (25 bp)
GAGACCGAACTAGCTGCAGGCGCCA
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--938--3951Chr06:9410601..9410625 (25 bp)
CGGTCGGCAGCGGACAGCGTCAAAT
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--1107--8131Chr06:9410590..9410614 (25 bp)
GGACAGCGTCAAATGCGCTCTCGCG
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--758--1811Chr06:9410564..9410588 (25 bp)
ACGCCGACGTTTGTGTGCGAGTGCC
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--1113--7411Chr06:9410399..9410423 (25 bp)
GTGTCTCGCCGGGAGGTACCAACCA
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--923--7991Chr06:9410388..9410412 (25 bp)
GGAGGTACCAACCACCGCTCAGGAA
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--485--71Chr06:9410326..9410350 (25 bp)
ATTGCCCGATGAGCTCTGGACTGAC
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--583--8531Chr06:9410310..9410334 (25 bp)
TGGACTGACCACGACTTACTTGAGC
LOC_Os06g16440
OsAffx.27667.1.S1_s_at--788--10471Chr06:9410295..9410319 (25 bp)
TTACTTGAGCGCTGCAGCAAGCTGC
LOC_Os06g16440
Target Sequence 
TTCTTCGTGCCAAAGAGGTGGGTTCAAGTTCGCCGGAGACGGAACGGGAAGCGCGGCGGTGCGGAGACCGAACTAGCTGC
AGGCGCCACCACTCCGGCCGGCGGTCGGCAGCGGACAGCGTCAAATGCGCTCTCGCGCACGCCGACGTTTGTGTGCGAGT
GCCCGCTCGAGAGCGGCGGCGAGATACTCAAGGGCCTCCTCCGCCGCCGCCGAGCCGACGCCGACGCCGCTCGACGCGGC
CCTCAGTCCCCGCAGCGACGTGTCTCGCCGGGAGGTACCAACCACCGCTCAGGAAGCCGAGCACCGGCGACGCAGCCGAT
GTCTGCTCCCGCATTGCCCGATGAGCTCTGGACTGACCACGACTTACTTGAGCGCTGCAGCAAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27667.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis