Browse Element(s) Details


Os.10726.1.S1_a_at

Description gb:AK066767.1
DB_XREF= gi:32976785
TID=Os.10726.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C72150(E1090),AU075649(E1090)~unknown protein (P0038C05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079D16, full insert sequence.
FL= gb:AK069382.1 gb:AK066767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g164309/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed
LOC_Os06g16460OsAffx.15459.1.S1_at11/116+9427383..9428032hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10726.1.S1_a_at--586--5171Chr06:9406849..9406873 (25 bp)
GCAAGACCAGATTTTCTGGACGCAG
LOC_Os06g16430
Os.10726.1.S1_a_at--71--1731Chr06:9406854..9406878 (25 bp)
ACCAGATTTTCTGGACGCAGGTCCA
LOC_Os06g16430
Os.10726.1.S1_a_at--355--10391Chr06:9406860..9406884 (25 bp)
TTTTCTGGACGCAGGTCCAGATCAT
LOC_Os06g16430
Os.10726.1.S1_a_at--695--6431Chr06:9406879..9406903 (25 bp)
GATCATGAAACATGGGTGCCACCTG
LOC_Os06g16430
Os.10726.1.S1_a_at--342--2391NONE
AAACATGGGTGCCACCTGAAGGTCA
NONE
Os.10726.1.S1_a_at--331--5311NONE
GAAGGTCAAACTGGTGATGGCCGCA
NONE
Os.10726.1.S1_a_at--598--7091Chr06:9406981..9407005 (25 bp)
GTCAAACTGGTGATGGCCGCACTTC
LOC_Os06g16430
Os.10726.1.S1_a_at--896--8611Chr06:9406988..9407012 (25 bp)
TGGTGATGGCCGCACTTCATTGAAC
LOC_Os06g16430
Os.10726.1.S1_a_at--1118--8871Chr06:9406991..9407015 (25 bp)
TGATGGCCGCACTTCATTGAACGAT
LOC_Os06g16430
Os.10726.1.S1_a_at--117--8471Chr06:9406994..9407018 (25 bp)
TGGCCGCACTTCATTGAACGATCGT
LOC_Os06g16430
Os.10726.1.S1_a_at--215--71Chr06:9407006..9407030 (25 bp)
ATTGAACGATCGTCTGGGCTACTGA
LOC_Os06g16430
Target Sequence 
GCAAGACCAGATTTTCTGGACGCAGGTCCAGATCATGAAACATGGGTGCCACCTGAAGGTCAAACTGGTGATGGCCGCAC
TTCATTGAACGATCGTCTGGGCTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10726.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis