Browse Element(s) Details


OsAffx.27667.2.S1_at

Description tigr:9634.m01654
TID=OsAffx.27667.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed
LOC_Os06g16460OsAffx.15459.1.S1_at11/116+9427383..9428032hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27667.2.S1_at--489--1871Chr06:9410505..9410529 (25 bp)
ACGAGGACACGCATGGGACCACGCT
LOC_Os06g16440
OsAffx.27667.2.S1_at--339--4071Chr06:9410504..9410528 (25 bp)
CGAGGACACGCATGGGACCACGCTC
LOC_Os06g16440
OsAffx.27667.2.S1_at--1122--6171Chr06:9410503..9410527 (25 bp)
GAGGACACGCATGGGACCACGCTCG
LOC_Os06g16440
OsAffx.27667.2.S1_at--118--8151Chr06:9410501..9410525 (25 bp)
GGACACGCATGGGACCACGCTCGAT
LOC_Os06g16440
OsAffx.27667.2.S1_at--996--5631Chr06:9410500..9410524 (25 bp)
GACACGCATGGGACCACGCTCGATC
LOC_Os06g16440
OsAffx.27667.2.S1_at--1055--1831Chr06:9410497..9410521 (25 bp)
ACGCATGGGACCACGCTCGATCCAG
LOC_Os06g16440
OsAffx.27667.2.S1_at--277--811Chr06:9410493..9410517 (25 bp)
ATGGGACCACGCTCGATCCAGCTCA
LOC_Os06g16440
OsAffx.27667.2.S1_at--105--8651Chr06:9410492..9410516 (25 bp)
TGGGACCACGCTCGATCCAGCTCAA
LOC_Os06g16440
OsAffx.27667.2.S1_at--725--8091Chr06:9410490..9410514 (25 bp)
GGACCACGCTCGATCCAGCTCAAGG
LOC_Os06g16440
OsAffx.27667.2.S1_at--633--5851Chr06:9410489..9410513 (25 bp)
GACCACGCTCGATCCAGCTCAAGGG
LOC_Os06g16440
OsAffx.27667.2.S1_at--602--1711Chr06:9410488..9410512 (25 bp)
ACCACGCTCGATCCAGCTCAAGGGC
LOC_Os06g16440
Target Sequence 
ACGAGGACACGCATGGGACCACGCTCGATCCAGCTCAAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27667.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis