Browse Element(s) Details


Os.52743.1.S1_at

Description gb:AK069024.1
DB_XREF= gi:32979048
TID=Os.52743.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003G07, full insert sequence.
FL= gb:AK069024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1633011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16300Os.17322.1.S1_at11/116+9288231..9290320Leucine Rich Repeat family protein, expressed
LOC_Os06g16310Os.28943.1.S1_x_at1/116+9293371..9296556retrotransposon protein, putative, unclassified
LOC_Os06g16320NANA6+9297392..9303352retrotransposon protein, putative, unclassified
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52743.1.S1_at--42--6571Chr06:9318975..9318999 (25 bp)
GATTCAGACAATGACCACGGAGAAA
LOC_Os06g16330
Os.52743.1.S1_at--567--5511Chr06:9318996..9319020 (25 bp)
GAAAGTCCGGTAGAATTCCTCCAAT
LOC_Os06g16330
Os.52743.1.S1_at--424--9491Chr06:9319020..9319044 (25 bp)
TCTGCTGCAGCTCGAATGTTCTTTA
LOC_Os06g16330
Os.52743.1.S1_at--1041--8791Chr06:9319036..9319060 (25 bp)
TGTTCTTTACTCGATATGACAGCAG
LOC_Os06g16330
Os.52743.1.S1_at--801--7911Chr06:9319102..9319126 (25 bp)
GGATTTTTCATATCATACCGGACCT
LOC_Os06g16330
Os.52743.1.S1_at--262--1551Chr06:9319156..9319180 (25 bp)
AGCTTTCAGTTCAGGCCGGCAAAGA
LOC_Os06g16330
Os.52743.1.S1_at--828--3171Chr06:9319208..9319232 (25 bp)
AATTGGATTCCATTGCCCTGAAAGA
LOC_Os06g16330
Os.52743.1.S1_at--1151--9671Chr06:9319351..9319375 (25 bp)
TCACCCACTTTGAATCTCTGACCAA
LOC_Os06g16330
Os.52743.1.S1_at--926--5191Chr06:9319387..9319411 (25 bp)
GAATTGATGTGGTTTCCCTTTCAAA
LOC_Os06g16330
Os.52743.1.S1_at--613--1391Chr06:9319442..9319466 (25 bp)
AGACGCCATTGATGTGCTTCCGTTC
LOC_Os06g16330
Os.52743.1.S1_at--621--3631Chr06:9319458..9319482 (25 bp)
CTTCCGTTCGCTGAGGGAGCTAGGA
LOC_Os06g16330
Target Sequence 
GATTCAGACAATGACCACGGAGAAAGTCCGGTAGAATTCCTCCAATCTGCTGCAGCTCGAATGTTCTTTACTCGATATGA
CAGCAGAAATCTGAGTGGAACAGCAGCAGCAGCATATGTTCTTTGCTGGATTTTTCATATCATACCGGACCTAAAAGAGA
GGTGCAGAATCGAAAGACTGAAGCTTTCAGTTCAGGCCGGCAAAGAAACAAGTGGAGCATGATAAGAGCTCGGAATTGGA
TTCCATTGCCCTGAAAGATAATTAAAAAAAGGAGACTAAATTTATCTATCACGACGAGAAGAGAAGAAGAGGAGAATGTG
ATTCCCAATCAGACACAAAAAAAACTCCAGCTTTATTCCTTCCTTTCCGACTGCACTCACCCACTTTGAATCTCTGACCA
AATGATGATGATGAATTGATGTGGTTTCCCTTTCAAAATTAACTTGCAAACAAATTGTGACGACGACAGACGCCATTGAT
GTGCTTCCGTTCGCTGAGGGAGCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis