Browse Element(s) Details

Os.17322.1.S1_at

Description

gb:CR291240
DB_XREF= gi:44677806
DB_XREF=CR291240
CLONE=y698c08p3
TID=Os.17322.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.17322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) receptor protein kinase-like protein (P0676F10.15), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16300	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os06g16300	Os.17322.1.S1_at	11/11	6	+	9288231..9290320	Leucine Rich Repeat family protein, expressed
LOC_Os06g16310	Os.28943.1.S1_x_at	1/11	6	+	9293371..9296556	retrotransposon protein, putative, unclassified
LOC_Os06g16320	NA	NA	6	+	9297392..9303352	retrotransposon protein, putative, unclassified
LOC_Os06g16330	Os.20348.1.S1_at	11/11	6	+	9314992..9322904	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330	Os.52743.1.S1_at	11/11	6	+	9314992..9322904	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17322.1.S1_at--1005--951	1	Chr06:9289042..9289066 (25 bp)	TCTCTCCAGCAACCAATTCCATGGT	LOC_Os06g16300
Os.17322.1.S1_at--1063--315	1	Chr06:9289056..9289080 (25 bp)	AATTCCATGGTGAAATCCCCTGCTC	LOC_Os06g16300
Os.17322.1.S1_at--259--613	1	Chr06:9289823..9289847 (25 bp)	GAGTGGTCCGATACCGGCATCATTG	LOC_Os06g16300
Os.17322.1.S1_at--489--281	1	Chr06:9289995..9290019 (25 bp)	AAGATTGCTACAGGATGGCGCCGAT	LOC_Os06g16300
Os.17322.1.S1_at--219--457	1	Chr06:9290012..9290036 (25 bp)	GCGCCGATGGCGATGTTCCATTAGA	LOC_Os06g16300
Os.17322.1.S1_at--1096--533	1	Chr06:9290041..9290065 (25 bp)	GAAGATTTTACTGTTCCGTCTGTTC	LOC_Os06g16300
Os.17322.1.S1_at--1088--401	1	Chr06:9290057..9290081 (25 bp)	CGTCTGTTCTTCAAATGCTGCTTAC	LOC_Os06g16300
Os.17322.1.S1_at--909--403	1	Chr06:9290144..9290168 (25 bp)	CGTTGGTTAGCTCAATTTCGAACTA	LOC_Os06g16300
Os.17322.1.S1_at--573--1061	1	Chr06:9290160..9290184 (25 bp)	TTCGAACTAAGCAACGTCAAACATT	LOC_Os06g16300
Os.17322.1.S1_at--400--243	1	Chr06:9290198..9290222 (25 bp)	AAAATGTGGGACTACTTACTATTTG	LOC_Os06g16300
Os.17322.1.S1_at--1062--115	1	Chr06:9290237..9290261 (25 bp)	AGTTTGATGTAAGCTCCTAGAGTGA	LOC_Os06g16300

Target Sequence

TCTCTCCAGCAACCAATTCCATGGTGAAATCCCCTGCTCTGTGGNCCACNTCAAGAGCCTCCAGTACNNNAGACTGAACN
ACAACACCCTGTCTGGTCCAATTCCTTCTGCATCAGCTAACCTGTCGCACCTTGTTTTCNNNCTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGATTTGTCTTACAACAACCTGAGTGGTCCGATACCGGCATCATTGGCAAGAAGATACAACGTAGTGG
GGAATCCCCNCATCTGCGAGCAAGATTGCTACAGGATGGCGCCGATGGCGATGTTCCATTAGATCAAGAAGATTTTACTG
TTCCGTCTGTTCTTCAAATGCTGCTTACTGAAAGAGCAAATGGAGAACNCCGTCTCTAAATAATTACTACCTCTATCCTN
TAATATTTGACGTTGGTTAGCTCAATTTCGAACTAAGCAACGTCAAACATTAAAAAACATAAAAAAAATGTGGGACTACT
TACTATTTGATGTTGCTTTTATTAGTTTGATGTAAGCTCCTAGAGTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis