Browse Element(s) Details

Os.23579.1.A1_at

Description

gb:CB647972
DB_XREF= gi:29642965
DB_XREF=OSJNEb11C08.r
CLONE=OSJNEb11C08
TID=Os.23579.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to RANBP9 isoform 1 (P0676F10.12), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16280	7/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os06g16300	Os.17322.1.S1_at	11/11	6	+	9288231..9290320	Leucine Rich Repeat family protein, expressed
LOC_Os06g16310	Os.28943.1.S1_x_at	1/11	6	+	9293371..9296556	retrotransposon protein, putative, unclassified
LOC_Os06g16320	NA	NA	6	+	9297392..9303352	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000059	biological_process	protein import into nucleus, docking
GO:0005634	cellular_component	nucleus
GO:0005643	cellular_component	nuclear pore
GO:0005737	cellular_component	cytoplasm
GO:0008565	molecular_function	protein transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23579.1.A1_at--846--819	1	Chr06:9266501..9266525 (25 bp)	GGAAGTTATGATGATGACCTGGCAA	LOC_Os06g16280
Os.23579.1.A1_at--606--583	1	Chr06:9266486..9266510 (25 bp)	GACCTGGCAAAAGCTGACTCTCTTA	LOC_Os06g16280
Os.23579.1.A1_at--328--571	1	Chr06:9266384..9266495 (25 bp)	GACTCTCTTAATGAGGTGAAGCTGT	LOC_Os06g16280
Os.23579.1.A1_at--421--267	1	Chr06:9266366..9266390 (25 bp)	AAGCTGTCGGACTTTCTAACAAACA	LOC_Os06g16280
Os.23579.1.A1_at--243--1039	1	Chr06:9266114..9266331 (25 bp)	TTTTGAATATCTTTGCCAGGCCCTA	LOC_Os06g16280
Os.23579.1.A1_at--316--441	1	Chr06:9266100..9266122 (23 bp)	GCCAGGCCCTAACAGATTCACAGAG	LOC_Os06g16280
Os.23579.1.A1_at--920--811	1	Chr06:9266076..9266100 (25 bp)	GGACTGCTGTGGACAAAGTTTTGAG	LOC_Os06g16280
Os.23579.1.A1_at--186--157	1	Chr06:9265986..9266010 (25 bp)	AGCTTTGATGCTTAGTGTAGGTTTA	NONE
Os.23579.1.A1_at--667--245	1	Chr06:9265825..9265849 (25 bp)	AAAATTTGCCATTTGTGTGTTCATG	NONE
Os.23579.1.A1_at--169--867	1	Chr06:9265812..9265836 (25 bp)	TGTGTGTTCATGTGACGTGTTGGAT	NONE
Os.23579.1.A1_at--382--691	1	Chr06:9265775..9265799 (25 bp)	GTATCCATATGTTTGGTTCGTGAAA	NONE

Target Sequence

GGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGT
CAAANTGTGGGAGAGTGATCGGCNGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACA
AAGTTTTGAGGAAATAAAGCGCATACATGATTNNGATATNTACATTNGGTCCTATTCCNCATTAGCCATTGGGNGAGCTT
TGATGCTTAGTGTAGGTTTATNGATTAAGAGTTNTGTGTACAATGTGAGGNNAGTCCTNGAAGGCAGGAGTTGGNGGTGT
GTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTNTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAA
TTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis