Browse Element(s) Details

Os.37647.2.S1_at

Description

gb:AK106309.1
DB_XREF= gi:32991518
TID=Os.37647.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU089699(E3862),AU089700(E3862)~similar to Oryza sativa chromosome 1, OSJNBb0032K15.17~unknown protein (P0676F10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D01, full insert sequence.
FL= gb:AK106309.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16240	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16200	OsAffx.15454.1.S1_x_at	11/11	6	+	9220517..9222358	expressed protein
LOC_Os06g16200	OsAffx.15454.2.S1_x_at	5/11	6	+	9220517..9222358	expressed protein
LOC_Os06g16210	NA	NA	6	+	9229392..9230028	hypothetical protein
LOC_Os06g16220	NA	NA	6	+	9233087..9236324	transposon protein, putative, unclassified
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.37647.2.S1_at--754--607	1	Chr06:9247158..9247182 (25 bp)	GAGTTTTCTGGTTCATCTTTGTAAT	LOC_Os06g16240
Os.37647.2.S1_at--502--789	1	Chr06:9247167..9247191 (25 bp)	GGTTCATCTTTGTAATTTTTCTCTC	LOC_Os06g16240
Os.37647.2.S1_at--159--369	1	Chr06:9247253..9247277 (25 bp)	CTATGACATAGAAGTACCCTCCAAT	LOC_Os06g16240
Os.37647.2.S1_at--253--699	1	Chr06:9247266..9247290 (25 bp)	GTACCCTCCAATATTCACAGACAAG	LOC_Os06g16240
Os.37647.2.S1_at--739--1021	1	Chr06:9247277..9247301 (25 bp)	TATTCACAGACAAGTGCCCTGCCGG	LOC_Os06g16240
Os.37647.2.S1_at--1037--453	1	Chr06:9247292..9247316 (25 bp)	GCCCTGCCGGTGCACTAGGAATTTA	LOC_Os06g16240
Os.37647.2.S1_at--1094--507	1	Chr06:9247303..9247327 (25 bp)	GCACTAGGAATTTAGTACTTGTACT	LOC_Os06g16240
Os.37647.2.S1_at--32--703	1	Chr06:9247317..9247341 (25 bp)	GTACTTGTACTTGCTTTTTTCTATC	LOC_Os06g16240
Os.37647.2.S1_at--559--701	1	Chr06:9247323..9247347 (25 bp)	GTACTTGCTTTTTTCTATCCGTGAG	LOC_Os06g16240
Os.37647.2.S1_at--266--489	1	Chr06:9247329..9247353 (25 bp)	GCTTTTTTCTATCCGTGAGTTTTGA	LOC_Os06g16240
Os.37647.2.S1_at--33--1025	1	Chr06:9247349..9247373 (25 bp)	TTTGAGTGGGAGCAACTCTTTTTCT	LOC_Os06g16240

Target Sequence

GAGTTTTCTGGTTCATCTTTGTAATTTTTCTCTCTCAAAATTTTCATATAGAAATAAGTTTATTTAACCCCTCAAATTCT
ATATATGGTGTTTAACTATGACATAGAAGTACCCTCCAATATTCACAGACAAGTGCCCTGCCGGTGCACTAGGAATTTAG
TACTTGTACTTGCTTTTTTCTATCCGTGAGTTTTGAGTGGGAGCAACTCTTTTTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis