Browse Element(s) Details

Description

gb:AB110195.1
DB_XREF= gi:32352187
TID=Os.1120.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AG017
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AG017.
FL= gb:AB110195.1 gb:AK058874.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16270	11/11	heat shock factor binding protein 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os06g16300	Os.17322.1.S1_at	11/11	6	+	9288231..9290320	Leucine Rich Repeat family protein, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.1120.1.S1_at--1013--327	1	Chr06:9263348..9263368 (21 bp)	CAAAATCTTCTGATGCAGATGCAAA	LOC_Os06g16270
Os.1120.1.S1_at--331--227	1	Chr06:9263350..9263456 (25 bp)	AAATCTTCTGATGCAGATGCAAACC	LOC_Os06g16270
Os.1120.1.S1_at--16--43	1	Chr06:9263352..9263458 (25 bp)	ATCTTCTGATGCAGATGCAAACCAG	LOC_Os06g16270
Os.1120.1.S1_at--527--365	1	Chr06:9263354..9263460 (25 bp)	CTTCTGATGCAGATGCAAACCAGGT	LOC_Os06g16270
Os.1120.1.S1_at--59--945	1	Chr06:9263356..9263462 (25 bp)	TCTGATGCAGATGCAAACCAGGTTC	LOC_Os06g16270
Os.1120.1.S1_at--1120--885	1	Chr06:9263358..9263464 (25 bp)	TGATGCAGATGCAAACCAGGTTCCA	LOC_Os06g16270
Os.1120.1.S1_at--235--633	1	Chr06:9263359..9263465 (25 bp)	GATGCAGATGCAAACCAGGTTCCAA	LOC_Os06g16270
Os.1120.1.S1_at--339--65	1	Chr06:9263360..9263466 (25 bp)	ATGCAGATGCAAACCAGGTTCCAAT	LOC_Os06g16270
Os.1120.1.S1_at--247--905	1	Chr06:9263361..9263467 (25 bp)	TGCAGATGCAAACCAGGTTCCAATC	LOC_Os06g16270
Os.1120.1.S1_at--63--921	1	Chr06:9263461..9263485 (25 bp)	TCCAATCTATGTCAGAGAACATCAT	LOC_Os06g16270
Os.1120.1.S1_at--132--343	1	Chr06:9263473..9263493 (21 bp)	CAGAGAACATCATTTCAAAGATAGA	LOC_Os06g16270

Target Sequence

CAAAATCTTCTGATGCAGATGCAAACCAGGTTCCAATCTATGTCAGAGAACATCATTTCAAAGATAGA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: