Browse Element(s) Details

Os.28409.2.S1_at

Description

gb:AK058973.1
DB_XREF= gi:32968991
TID=Os.28409.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.28409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acyl-CoA:1-acylglycerol-3-phosphate acyltransferase (B1100D10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D03, full insert sequence.
FL= gb:AK073155.1 gb:AK058973.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16290	11/11	H/ACA ribonucleoprotein complex subunit 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os06g16300	Os.17322.1.S1_at	11/11	6	+	9288231..9290320	Leucine Rich Repeat family protein, expressed
LOC_Os06g16310	Os.28943.1.S1_x_at	1/11	6	+	9293371..9296556	retrotransposon protein, putative, unclassified
LOC_Os06g16320	NA	NA	6	+	9297392..9303352	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28409.2.S1_at--785--7	1	Chr06:9282805..9282829 (25 bp)	ATTGCTGGCAACATTTCTCCCATTG	LOC_Os06g16290
Os.28409.2.S1_at--598--73	1	Chr06:9282842..9282866 (25 bp)	ATGTTCCCATCCTTTGCGAAGAAGC	LOC_Os06g16290
Os.28409.2.S1_at--176--617	1	Chr06:9283847..9283870 (24 bp)	GAGGATCTCGCAACAGCTGGGACTA	LOC_Os06g16290
Os.28409.2.S1_at--253--623	1	Chr06:9283875..9283899 (25 bp)	GAGGCCTACCTGTTGTGTATTGGTT	LOC_Os06g16290
Os.28409.2.S1_at--656--687	1	Chr06:9283891..9283915 (25 bp)	GTATTGGTTCTGACCAAGCCAGCCA	LOC_Os06g16290
Os.28409.2.S1_at--1013--281	1	Chr06:9283979..9284003 (25 bp)	AAGTTGCTGAGGTCACGTCTTCAAT	LOC_Os06g16290
Os.28409.2.S1_at--880--121	1	Chr06:9284010..9284034 (25 bp)	AGTTCACACTTGTACTTGTAGCTAC	LOC_Os06g16290
Os.28409.2.S1_at--229--167	1	Chr06:9284067..9284091 (25 bp)	AGCCCTGTTTTGTACTGTGTCAGCA	LOC_Os06g16290
Os.28409.2.S1_at--434--325	1	Chr06:9284098..9284122 (25 bp)	CAACCTGTGGCGGATGTTTTTCGAG	LOC_Os06g16290
Os.28409.2.S1_at--350--561	1	Chr06:9284134..9284158 (25 bp)	GACAATAGTTCCTCTGCTAGATTAT	LOC_Os06g16290
Os.28409.2.S1_at--593--811	1	Chr06:9284179..9284203 (25 bp)	GGACTAATTGATTCCCTACCTGGAT	LOC_Os06g16290

Target Sequence

ATTGCTGGCAACATTTCTCCCATTGATGTGATAACACATGTTCCCATCCTTTGCGAAGAAGCCAACATTCCTTATGTATA
TGTTCCGTCGAAAGAGGATCTCGCAACAGCTGGGACTACCAAGAGGCCTACCTGTTGTGTATTGGTTCTGACCAAGCCAG
CCAAGGGCGAGCTTGAGGAAGATGTCAAGGAGAAACTTAAGACGGACTACGATCAAGTTATGTCTGAAGTTGCTGAGGTC
ACGTCTTCAATGTTCTAAGTTCACACTTGTACTTGTAGCTACAAAATCAGAATCAACATCCACTTCCAGCACACAGCCCT
GTTTTGTACTGTGTCAGCATGACATCAACCTGTGGCGGATGTTTTTCGAGTGCCTGTAGGAGACAATAGTTCCTCTGCTA
GATTATCTATCGGATGTTGTCTTTTTGGACTAATTGATTCCCTACCTGGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis