Browse Element(s) Details

Os.10990.1.S1_at

Description

gb:AK111407.1
DB_XREF= gi:32996616
TID=Os.10990.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E09, full insert sequence.
FL= gb:AK102635.1 gb:AK058911.1 gb:AK106215.1 gb:AK111407.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16260	11/11	Microsomal signal peptidase 21 kDa subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16220	NA	NA	6	+	9233087..9236324	transposon protein, putative, unclassified
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10990.1.S1_at--527--339	1	Chr06:9256527..9256551 (25 bp)	CAGCGGTTTATCATGTGGCATCCAT	LOC_Os06g16260
Os.10990.1.S1_at--370--753	1	Chr06:9256513..9256537 (25 bp)	GTGGCATCCATCTTTCAGTGGTTTA	LOC_Os06g16260
Os.10990.1.S1_at--740--977	1	Chr06:9256466..9256490 (25 bp)	TAACGTGACTTTTGGTTCGGCAACT	LOC_Os06g16260
Os.10990.1.S1_at--61--695	1	Chr06:9256378..9256402 (25 bp)	GTAGAATCGAACCTGGCTAAGCCTT	LOC_Os06g16260
Os.10990.1.S1_at--365--831	1	Chr06:9256364..9256388 (25 bp)	GGCTAAGCCTTTTTCCATGGATTTG	LOC_Os06g16260
Os.10990.1.S1_at--709--569	1	Chr06:9256329..9256353 (25 bp)	GACTCTTGAGTGCTAAATCCCTTTC	LOC_Os06g16260
Os.10990.1.S1_at--171--789	1	Chr06:9256302..9256326 (25 bp)	GGTTACCAACTGCTATTCAGCGGCA	LOC_Os06g16260
Os.10990.1.S1_at--1152--965	1	Chr06:9256286..9256310 (25 bp)	TCAGCGGCAGTTCTTTTCACTATTG	LOC_Os06g16260
Os.10990.1.S1_at--402--339	1	Chr06:9256213..9256237 (25 bp)	CAGCGCGGCTGTGATGGTTCATTGA	LOC_Os06g16260
Os.10990.1.S1_at--42--169	1	Chr06:9256040..9256064 (25 bp)	AGCCATATTATAGATCTCCAGCCCA	LOC_Os06g16260
Os.10990.1.S1_at--868--533	1	Chr06:9255967..9255991 (25 bp)	GAAGTTCGTTTGGACGTGGTCTCTT	LOC_Os06g16260

Target Sequence

CAGCGGTTTATCATGTGGCATCCATCTTTCAGTGGTTTACAGTTAATTGCGCAAGAAAATTTAACGTGACTTTTGGTTCG
GCAACTGGTTATTGGATGCTGACTTTGATACAATATAAGATGAATTCATAAAGCAATCCTTTGAGGCAAGTAGAATCGAA
CCTGGCTAAGCCTTTTTCCATGGATTTGTTGGAGTCTTGACTCTTGAGTGCTAAATCCCTTTCTTGGTTACCAACTGCTA
TTCAGCGGCAGTTCTTTTCACTATTGTATCTGTCTTCTCAATCCAAACTATGCTGAAGTCTGATCACTGAATAGCAGCGC
GGCTGTGATGGTTCATTGAATACTTTGTTGAATGCTAGTAGCTCATGTGCCATAAAGCCCTAACAGAATACTGGTGAGAT
CTCAACATGCACATATATGCTTGTACTTGTGTGAGATTGAGGCAAATATTTCTGTGTATAGTAAGTATATGTGAAAAGGA
GAACTCGAGCCATATTATAGATCTCCAGCCCATTAAATCGTATCCAGAATATTGATATGGTGTTGTCTTTTTGGATAAAA
GAAGTTCGTTTGGACGTGGTCTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis