Browse Element(s) Details

Os.1120.1.S1_s_at

Description

gb:AB110195.1
DB_XREF= gi:32352187
TID=Os.1120.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AG017
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AG017.
FL= gb:AB110195.1 gb:AK058874.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16270	10/11	heat shock factor binding protein 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os06g16300	Os.17322.1.S1_at	11/11	6	+	9288231..9290320	Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.1120.1.S1_s_at--105--499	1	NONE	GCATCCCCATCAAGGCTGATCAGGA	NONE
Os.1120.1.S1_s_at--399--41	1	Chr06:9263154..9263178 (25 bp)	ATCAGGACTCGGATGGCTCGGCGCA	LOC_Os06g16270
Os.1120.1.S1_s_at--781--135	1	Chr06:9263178..9263202 (25 bp)	AGAGCACTGCTGATATGACCGCTTT	LOC_Os06g16270
Os.1120.1.S1_s_at--344--387	1	Chr06:9263187..9263352 (25 bp)	CTGATATGACCGCTTTCGTGCAAAA	LOC_Os06g16270
Os.1120.1.S1_s_at--702--759	1	Chr06:9264007..9264031 (25 bp)	GGGCACTGAAGGTATTACCCCAACT	LOC_Os06g16270
Os.1120.1.S1_s_at--664--579	1	Chr06:9264041..9264065 (25 bp)	GACGAAGAATCGAAGCCTGCGGGTA	LOC_Os06g16270
Os.1120.1.S1_s_at--152--383	1	Chr06:9264057..9264081 (25 bp)	CTGCGGGTAGCTCTGCCGAATGAAA	LOC_Os06g16270
Os.1120.1.S1_s_at--232--653	1	Chr06:9264119..9264143 (25 bp)	GATTTGATTTCCGTATCGACATCTC	LOC_Os06g16270
Os.1120.1.S1_s_at--825--949	1	Chr06:9264140..9264164 (25 bp)	TCTCCAGCCATTCATCACTGACAAA	LOC_Os06g16270
Os.1120.1.S1_s_at--585--153	1	Chr06:9264184..9264208 (25 bp)	AGCAGGGCACTTTTATGCATCTGAG	LOC_Os06g16270
Os.1120.1.S1_s_at--786--1023	1	Chr06:9264279..9264303 (25 bp)	TATTGTACTGTACTGCGCAGAGCAA	LOC_Os06g16270

Target Sequence

GCATCCCCATCAAGGCTGATCAGGACTCGGATGGCTCGGCGCAGAGCACTGCTGATATGACCGCTTTCGTGCAAAATCTT
CTGATGCAGATGCAAACCAGGTTCCAATCTATGTCAGAGAACATCATTTCAAAGATAGATGAAATGGGCGCAAGAATTGA
TGAGTTGGAGCAGAGCATCAATGACCTCAAGGTTGAGATGGGCACTGAAGGTATTACCCCAACTAAGCCAAAGGACGAAG
AATCGAAGCCTGCGGGTAGCTCTGCCGAATGAAAGAAACAGAAGCAGTTGAAATGGTAGCATGCCATTCCAGATTTGATT
TCCGTATCGACATCTCCAGCCATTCATCACTGACAAATTACATGCTGTAAGATCTTAGCAGGGCACTTTTATGCATCTGA
GATTTGTGGTAGCAGTTGAGAATCTCTCTTATAGATGTTGTTGCATGTTTTACTGTGAACTTCTCTGTGGATATTGTACT
GTACTGCGCAGAGCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis