Browse Element(s) Details


OsAffx.15454.2.S1_x_at

Description tigr:9634.m01625
TID=OsAffx.15454.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1617011/11expressed protein
LOC_Os06g162005/11expressed protein
LOC_Os06g162402/11expressed protein
LOC_Os06g161601/11expressed protein
LOC_Os09g208501/11expressed protein
LOC_Os11g376301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16130OsAffx.10473.1.S1_at4/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16130OsAffx.22702.1.S1_at1/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16140OsAffx.27664.1.S1_at11/116+9185768..9188474expressed protein
LOC_Os06g16150OsAffx.31349.2.S1_x_at9/116+9195475..9196710hypothetical protein
LOC_Os06g16150OsAffx.31349.1.S1_x_at8/116+9195475..9196710hypothetical protein
LOC_Os06g16160OsAffx.31349.2.S1_x_at11/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.31349.1.S1_x_at6/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.1.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.2.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16170OsAffx.15454.2.S1_x_at11/116+9206919..9208514expressed protein
LOC_Os06g16170OsAffx.15454.1.S1_x_at4/116+9206919..9208514expressed protein
LOC_Os06g16180NANA6+9214329..9214598hypothetical protein
LOC_Os06g16190NANA6+9218661..9218870hypothetical protein
LOC_Os06g16200OsAffx.15454.1.S1_x_at11/116+9220517..9222358expressed protein
LOC_Os06g16200OsAffx.15454.2.S1_x_at5/116+9220517..9222358expressed protein
LOC_Os06g16210NANA6+9229392..9230028hypothetical protein
LOC_Os06g16220NANA6+9233087..9236324transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15454.2.S1_x_at--92--4671Chr06:9207494..9207518 (25 bp)
GCGGGCTTCGACTACGCCGTCGTCT
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--306--4271Chr06:9207304..9207328 (25 bp)
CCGGCGTGTTCAACGGCACGGCGAT
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--230--511Chr06:9207281..9207305 (25 bp)
ATCGTTCGCACGCTGTCGCCGACGT
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--778--9211Chr06:9207200..9207224 (25 bp)
TCCACGGCGAACGAGACGCGGATGT
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--207--991Chr06:9207139..9207163 (25 bp)
AGGAGTTCAGGAGGGCGGCCATGGC
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--17--6491Chr06:9207034..9207058 (25 bp)
GATACGGGCACTGGGCGCACGAGAA
LOC_Os06g16170
OsAffx.15454.2.S1_x_at--1120--4112Chr06:9222231..9222255 (25 bp)
CGCACGAGAAGGTGACGCTGTACAA
LOC_Os06g16200
OsAffx.15454.2.S1_x_at--762--5312Chr06:9222238..9222262 (25 bp)
GAAGGTGACGCTGTACAACGACTGC
LOC_Os06g16200
OsAffx.15454.2.S1_x_at--41--3896Chr09:12555730..12555749 (20 bp)
CTGTACAACGACTGCGTGCACTGGT
LOC_Os09g20850
OsAffx.15454.2.S1_x_at--982--5752Chr06:9222290..9222314 (25 bp)
GACGTGTGGAACGAGATGCTGCTCC
LOC_Os06g16200
OsAffx.15454.2.S1_x_at--373--1873Chr06:9247116..9247140 (25 bp)
ACGAGATGCTGCTCCAGATGCTGCT
LOC_Os06g16240
Target Sequence 
GCGGGCTTCGACTACGCCGTCGTCTCCGCGGCGAACTGGTTCACCCGCCCGTCCATGTTCCACGAGCGCGGCCGCCTCGT
CGGCTGCCACTACTGCCTCGTCCCGGGCGTCCCCGACCTCACGCTCCGCTACTCCCTCCGCGCCGCGTTCCGCACCGCGC
TGCGCGCGCTCGCCGCCGGCGCCGGCGGCGCCGGCGTGTTCAACGGCACGGCGATCGTTCGCACGCTGTCGCCGACGTCG
CACTTCGAGGGCGGGGAGTGGAACAAGGGCGGCGACTGCCGGCGCACGCGGCCGTCCACGGCGAACGAGACGCGGATGTC
CGGGCTGGACCTCGACTTCCACACGGCGCAGGTGGAGGAGTTCAGGAGGGCGGCCATGGCGAGCGGGCGGAGCGCGGCGA
GGCTGCTGCTGATGGACACGACGGCGGCGATGGTGCTCCGGCCGGACGGGCACCCGAGCAGATACGGGCACTGGGCGCAC
GAGAAGGTGACGCTGTACAACGACTGCGTGCACTGGTGCCTCCCTGGACCCATCGACGTGTGGAACGAGATGCTGCTCCA
GATGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15454.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis