Browse Element(s) Details


OsAffx.27664.1.S1_at

Description tigr:9634.m01621
TID=OsAffx.27664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16090NANA6+9159783..9162500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16100OsAffx.1196.1.S1_at2/116+9167798..9172169Zinc knuckle family protein
LOC_Os06g16100OsAffx.1196.1.S1_x_at1/116+9167798..9172169Zinc knuckle family protein
LOC_Os06g16100OsAffx.15648.1.S1_at1/116+9167798..9172169Zinc knuckle family protein
LOC_Os06g16110NANA6+9174705..9175184hypothetical protein
LOC_Os06g16120NANA6+9176214..9177125hypothetical protein
LOC_Os06g16130OsAffx.10473.1.S1_at4/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16130OsAffx.22702.1.S1_at1/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16140OsAffx.27664.1.S1_at11/116+9185768..9188474expressed protein
LOC_Os06g16150OsAffx.31349.2.S1_x_at9/116+9195475..9196710hypothetical protein
LOC_Os06g16150OsAffx.31349.1.S1_x_at8/116+9195475..9196710hypothetical protein
LOC_Os06g16160OsAffx.31349.2.S1_x_at11/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.31349.1.S1_x_at6/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.1.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.2.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16170OsAffx.15454.2.S1_x_at11/116+9206919..9208514expressed protein
LOC_Os06g16170OsAffx.15454.1.S1_x_at4/116+9206919..9208514expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27664.1.S1_at--832--471Chr06:9187560..9187584 (25 bp)
ATCTGCACATACTAGCTCTGTTGGG
LOC_Os06g16140
OsAffx.27664.1.S1_at--134--2971Chr06:9187603..9187627 (25 bp)
AATGGAGGTGCATCTGGACTTTAAT
LOC_Os06g16140
OsAffx.27664.1.S1_at--403--4791Chr06:9187631..9187655 (25 bp)
GCTCCACCTTGTTTACTTATTGCTG
LOC_Os06g16140
OsAffx.27664.1.S1_at--113--10231Chr06:9187648..9187672 (25 bp)
TATTGCTGCCGCTAGAATATCTGCA
LOC_Os06g16140
OsAffx.27664.1.S1_at--789--8131Chr06:9187676..9187700 (25 bp)
GGACATACAAGCACACTAGGGCTCT
LOC_Os06g16140
OsAffx.27664.1.S1_at--54--7311Chr06:9187762..9187786 (25 bp)
GTGCTTCAGCTACATATTATTGGTC
LOC_Os06g16140
OsAffx.27664.1.S1_at--325--1431Chr06:9187870..9187894 (25 bp)
AGAACACTTTTACTCGAGCCATCAA
LOC_Os06g16140
OsAffx.27664.1.S1_at--232--71Chr06:9187901..9187925 (25 bp)
ATTGCAAGGCTTGTGGGACACCATG
LOC_Os06g16140
OsAffx.27664.1.S1_at--12--10091Chr06:9187996..9188020 (25 bp)
TAGGGATGACCTGATCACATTGATC
LOC_Os06g16140
OsAffx.27664.1.S1_at--906--6431Chr06:9188017..9188041 (25 bp)
GATCATCCGAGTGCTACAGGTGCCA
LOC_Os06g16140
OsAffx.27664.1.S1_at--401--4331Chr06:9188038..9188062 (25 bp)
GCCATGGGACCCAGGTGGTTTACGT
LOC_Os06g16140
Target Sequence 
ATCTGCACATACTAGCTCTGTTGGGTTGGACATTGATTGCTAAAATGGAGGTGCATCTGGACTTTAATGGGGCTCCACCT
TGTTTACTTATTGCTGCCGCTAGAATATCTGCACAAGGACATACAAGCACACTAGGGCTCTTGAAAGGTGAATCAATTTC
AATGCTACAGATACAGTGGGATCTAGAATTCAGTGCTATTATGTGCTTCAGCTACATATTATTGGTCTATTATACTGAAG
AATGGTCTTGGCCGATGGAAAATGAAAGGAATAAAGAAAAGTGCAATCAAGAATTTCATTTCAGCATAGAAGAACACTTT
TACTCGAGCCATCAAATCATTATTGCAAGGCTTGTGGGACACCATGAGTACTATGGAGAAGGCAAAGAGACTAAGCTGCA
GCGAAAGATTGTGCGTACAAGGAAAAGCAATGGTGATAGGGATGACCTGATCACATTGATCATCCGAGTGCTACAGGTGC
CATGGGACCCAGGTGGTTTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis