Browse Element(s) Details


OsAffx.22702.1.S1_at

Description gb:NM_184765.1
DB_XREF= gi:34896619
TID=OsAffx.22702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026A15.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3706011/11transposon protein, putative, Mutator sub-class
LOC_Os08g170402/11retrotransposon protein, putative, unclassified
LOC_Os12g188001/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g161301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22702.1.S1_at--977--731Chr03:20504008..20504032 (25 bp)
ATGTTCAGGACTGCCTGTTCCACAA
LOC_Os03g37060
OsAffx.22702.1.S1_at--520--8771Chr03:20503781..20503805 (25 bp)
TGTATATGATCCAGATGCCTCTCCC
LOC_Os03g37060
OsAffx.22702.1.S1_at--294--2851Chr03:20503704..20503728 (25 bp)
AAGTGCCTACTTGTGGTAACAACAC
LOC_Os03g37060
OsAffx.22702.1.S1_at--153--7512Chr12:10882992..10883091 (25 bp)
GTGGTAACAACACTATGCCTCCTAC
LOC_Os12g18800
OsAffx.22702.1.S1_at--143--9191Chr03:20503599..20503622 (24 bp)
TGCCTCCTACTGCTATTGCTGATAG
LOC_Os03g37060
OsAffx.22702.1.S1_at--458--9112Chr08:10435861..10435885 (25 bp)
TGCTGATCAAGCCACATCTACTGCT
LOC_Os08g17040
OsAffx.22702.1.S1_at--523--2672Chr08:10436040..10436064 (25 bp)
AAGCCCCTGCACAAGTTGCTATGCA
LOC_Os08g17040
OsAffx.22702.1.S1_at--1143--9071Chr03:20503460..20503484 (25 bp)
TGCTATGCAGGTGGATGACAGCCCT
LOC_Os03g37060
OsAffx.22702.1.S1_at--333--6312Chr06:9182789..9182870 (25 bp)
GATGACAGCCCTGGACCAGTTACAA
LOC_Os06g16130
OsAffx.22702.1.S1_at--495--5932Chr06:9182872..9183024 (25 bp)
GAGCAGGAGTGTTGCATCCCCAGTA
NONE
OsAffx.22702.1.S1_at--1129--531Chr03:20503406..20503430 (25 bp)
ATCCCCAGTACATGCAAGTCCATTT
LOC_Os03g37060
Target Sequence 
ATGTTCAGGACTGCCTGTTCCACAACTGTGCCTCCAATGCCAGACAAGAGCCTATGGGACAAAGTGGACACAGGATTCAA
GATGTGGCCACCAATACTGAAGAGATCAGCTGGAAGACCTAGAACAAGGAAGTTCATTGGTGTTGAAGAAGGTGGTTCAG
GAAAGAAAAGAAGGAGATGCAAGAGGTGCCATGGCTTTGGCCACCTACAAAAGACATGCAATGAACCTGTATATGATCCA
GATGCCTCTCCCCCAGCTCCACCCAAGCCTAAGAGAGTTAGAAAGAAGAAATCTAAGCCTGAACAAGTGCCTACTTGTGG
TAACAACACTATGCCTCCTACTGCTATTGCTGATAGTGCTGATCAAGCCACATCTACTGCTGCCCCTGCTGCTGATCAAG
CCCATGCTGCTGCTGCTGATCAAGCCCTTGCTGGTGCTACTGCTGCTGCTGATCAAGCCCCTGCACAAGTTGCTATGCAG
GTGGATGACAGCCCTGGACCAGTTACAAGGAGCAGGAGTGTTGCATCCCCAGTACATGCAAGTCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis