Browse Element(s) Details


Os.2713.1.S1_at

Description gb:AK060200.1
DB_XREF= gi:32970218
TID=Os.2713.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative purple acid phosphatase (OSJNBa0004B24.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G01, full insert sequence.
FL= gb:AK060200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3713011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g37140Os.51979.1.S1_at11/113+20539056..20544407expressed protein
LOC_Os03g37170OsAffx.30564.1.S1_s_at11/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_s_at8/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_x_at5/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.3.S1_at4/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.1.S1_at4/113+20548981..20549804hypothetical protein
LOC_Os03g37180NANA3+20552788..20555524hypothetical protein
LOC_Os03g37194OsAffx.22699.1.S1_x_at10/113+20556181..20563226retrotransposon protein, putative, unclassified
LOC_Os03g37194OsAffx.13786.1.S1_x_at2/113+20556181..20563226retrotransposon protein, putative, unclassified
LOC_Os03g37194OsAffx.18275.1.S1_x_at1/113+20556181..20563226retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2713.1.S1_at--199--3471Chr03:20529472..20529496 (25 bp)
CAGGGAAGGCTTGGCCCACAGGTAC
LOC_Os03g37130
Os.2713.1.S1_at--161--6991Chr03:20529371..20529395 (25 bp)
GTACCGCAATCCGAAACCAGCTTGG
LOC_Os03g37130
Os.2713.1.S1_at--755--1691Chr03:20529356..20529380 (25 bp)
ACCAGCTTGGTCAGTCTTCCGGGAA
LOC_Os03g37130
Os.2713.1.S1_at--121--7051Chr03:20529301..20529325 (25 bp)
GTAAATGCCACGCATGCTCACTGGA
LOC_Os03g37130
Os.2713.1.S1_at--898--8871Chr03:20529236..20529260 (25 bp)
TGATGTGTGGATAACGTCGCTGGCT
LOC_Os03g37130
Os.2713.1.S1_at--755--3971Chr03:20529206..20529230 (25 bp)
CGGGTGCATCCAGGACGGTAGTCAT
LOC_Os03g37130
Os.2713.1.S1_at--594--8131Chr03:20529174..20529198 (25 bp)
GGAAAATTCTGATGTCCCCTTAAGA
LOC_Os03g37130
Os.2713.1.S1_at--608--3571Chr03:20529115..20529139 (25 bp)
CATAGTCTAAGTGCCTGCCATGTAT
LOC_Os03g37130
Os.2713.1.S1_at--414--6051Chr03:20529011..20529035 (25 bp)
GAGATACCACTGTAGCTTGTCGACA
LOC_Os03g37130
Os.2713.1.S1_at--978--6951Chr03:20529000..20529024 (25 bp)
GTAGCTTGTCGACATATCTCTTGAT
LOC_Os03g37130
Os.2713.1.S1_at--899--4771Chr03:20528926..20528950 (25 bp)
GCTTACCTTGTGTAACTGGACGACA
LOC_Os03g37130
Target Sequence 
CAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTG
AACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGAT
GTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTA
AGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACG
ACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTG
TCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGAGGAATGCTTACCTTGTGTA
ACTGGACGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis