Browse Element(s) Details


Os.37371.1.S1_at

Description gb:AK058939.1
DB_XREF= gi:32968957
TID=Os.37371.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0004B24.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G05, full insert sequence.
FL= gb:AK058939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3709010/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g37140Os.51979.1.S1_at11/113+20539056..20544407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37371.1.S1_at--609--1371Chr03:20516085..20516109 (25 bp)
AGAGCGAGATGCACGACTTCTGCTT
LOC_Os03g37090
Os.37371.1.S1_at--265--5991NONE
GAGACCCTATGTGCACTAGCTTTGA
NONE
Os.37371.1.S1_at--893--7591Chr03:20513862..20513886 (25 bp)
GGGCAGAGATACCTTGAGACTTCAA
LOC_Os03g37090
Os.37371.1.S1_at--1054--6451Chr03:20513836..20513860 (25 bp)
GATAATGCCAGCTGGTGTCGTTGCT
LOC_Os03g37090
Os.37371.1.S1_at--283--1131Chr03:20513668..20513692 (25 bp)
AGTGCTTTGATGTCTGCGTTCTACC
LOC_Os03g37090
Os.37371.1.S1_at--340--4631Chr03:20513653..20513677 (25 bp)
GCGTTCTACCTGTTCAAAATTGCAA
LOC_Os03g37090
Os.37371.1.S1_at--74--5171Chr03:20513622..20513646 (25 bp)
GCAACCATATCCCACCGAAGAAAGA
LOC_Os03g37090
Os.37371.1.S1_at--761--6091Chr03:20513599..20513623 (25 bp)
GAGTGAACCAGGCTTTGCTTGTGAA
LOC_Os03g37090
Os.37371.1.S1_at--301--7411Chr03:20513511..20513535 (25 bp)
GTGATCAGCAAAGCCATTTTTCGCC
LOC_Os03g37090
Os.37371.1.S1_at--777--171Chr03:20513496..20513520 (25 bp)
ATTTTTCGCCTGTAATTCTTTAGAG
LOC_Os03g37090
Os.37371.1.S1_at--777--6111Chr03:20513474..20513498 (25 bp)
GAGTGCACTTCTGATGTCTGAACAA
LOC_Os03g37090
Target Sequence 
AGAGCGAGATGCACGACTTCTGCTTCACGATCCCCTACGGCTTCGCCGTCCTGGCCGGCGGCGTGCTGGGCTACGCCCGC
CGCGGCAGCACCGCCTCCCTGGCCGGCGGCGCGGGCGCCGGCGCGCTCCTCCTCCTCGCGGGCTTCGTCAGCCTCAAGAC
CTTCGAGAAGCGCCGCAACTCCTACCTCGCCCTCGCCCTCGAGACCCTATGTGCACTAGCTTTGACTTATGTTATGGGGC
AGAGATACCTTGAGACTTCAAAGATAATGCCAGCTGGTGTCGTTGCTGGCCTCAGTGCTTTGATGTCTGCGTTCTACCTG
TTCAAAATTGCAACTGGTGGCAACCATATCCCACCGAAGAAAGAGTGAACCAGGCTTTGCTTGTGAAGCATGTTTTGTTA
TACTCTAAGACTACGACAGATTTGTGTTGTGGAGTTTCATTGTAAGTCCAGTGATCAGCAAAGCCATTTTTCGCCTGTAA
TTCTTTAGAGTGCACTTCTGATGTCTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis