Browse Element(s) Details


OsAffx.18275.1.S1_x_at

Description gb:NM_195699.1
DB_XREF= gi:37532757
TID=OsAffx.18275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1780011/11hypothetical protein
LOC_Os03g319864/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g184103/11hypothetical protein
LOC_Os08g222843/11retrotransposon protein, putative, unclassified
LOC_Os05g227502/11retrotransposon protein, putative, unclassified
LOC_Os11g199702/11hypothetical protein
LOC_Os05g223302/11retrotransposon protein, putative, unclassified
LOC_Os06g261502/11retrotransposon protein, putative, unclassified
LOC_Os12g143742/11retrotransposon protein, putative, unclassified
LOC_Os08g162401/11retrotransposon protein, putative, unclassified
LOC_Os02g250901/11retrotransposon protein, putative, unclassified
LOC_Os08g211241/11retrotransposon protein, putative, unclassified
LOC_Os07g263701/11hypothetical protein
LOC_Os08g198901/11retrotransposon protein, putative, unclassified
LOC_Os04g162001/11retrotransposon protein, putative, unclassified
LOC_Os11g238701/11retrotransposon protein, putative, unclassified
LOC_Os12g333601/11retrotransposon protein, putative, unclassified
LOC_Os04g123601/11hypothetical protein
LOC_Os02g297301/11retrotransposon protein, putative, unclassified
LOC_Os01g450301/11retrotransposon protein, putative, unclassified
LOC_Os10g111901/11retrotransposon protein, putative, unclassified
LOC_Os06g257601/11retrotransposon protein, putative, unclassified
LOC_Os11g342901/11retrotransposon protein, putative, unclassified
LOC_Os12g225101/11retrotransposon protein, putative, unclassified
LOC_Os06g341401/11retrotransposon protein, putative, unclassified
LOC_Os08g224801/11retrotransposon protein, putative, unclassified
LOC_Os09g222301/11retrotransposon protein, putative, unclassified
LOC_Os03g269001/11hypothetical protein
LOC_Os07g436501/11retrotransposon protein, putative, unclassified
LOC_Os11g205101/11retrotransposon protein, putative, unclassified
LOC_Os03g450501/11retrotransposon protein, putative, unclassified
LOC_Os11g237361/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g480701/11retrotransposon protein, putative, unclassified
LOC_Os03g371941/11retrotransposon protein, putative, unclassified
LOC_Os08g174801/11retrotransposon protein, putative, unclassified
LOC_Os03g365701/11retrotransposon protein, putative, unclassified
LOC_Os08g084601/11retrotransposon protein, putative, unclassified
LOC_Os03g358701/11retrotransposon protein, putative, unclassified
LOC_Os02g333601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein
LOC_Os10g17840NANA10+8696460..8697957retrotransposon protein, putative, unclassified
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18275.1.S1_x_at--928--6896Chr11:10369808..10369828 (21 bp)
GTATCAAGCTACAGGACCAGTCTAC
LOC_Os11g18410
OsAffx.18275.1.S1_x_at--418--7151Chr10:8675020..8675044 (25 bp)
GTCTACTTACCAGGAGGAGTCTTCT
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--928--8031Chr10:8675035..8675059 (25 bp)
GGAGTCTTCTCGAATTATCGGCCAT
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--1103--1232Chr10:8675079..8675103 (25 bp)
AGTTGTCCAGTCGATCCCTCTTAAT
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--634--1691Chr10:8675154..8675178 (25 bp)
ACCACTTTCGGCTCTAGGCCAATTA
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--848--10071Chr10:8675168..8675192 (25 bp)
TAGGCCAATTAGTTAATCCCCGATT
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--254--58522Chr12:8197464..8197488 (25 bp)
GACCAGGTTGCATCTATGTTCTTAC
LOC_Os12g14374
OsAffx.18275.1.S1_x_at--1085--82526Chr12:12705621..12705684 (25 bp)
GGCAGCAGGTTGTGCAGCCGATTCA
LOC_Os12g22510
OsAffx.18275.1.S1_x_at--715--4991Chr10:8675412..8675436 (25 bp)
GCAGGTTTTGCAGCCGGTTCAACAG
LOC_Os10g17800
OsAffx.18275.1.S1_x_at--262--2136Chr12:6074083..6074269 (25 bp)
ACAGGTGGTTCAGCCGATTCAGCAG
NONE
OsAffx.18275.1.S1_x_at--336--4712Chr10:8675497..8675521 (25 bp)
GCTGGGTTTGCGATACCTGGTTGCC
LOC_Os10g17800
Target Sequence 
GTATCAAGCTACAGGACCAGTCTACTTACCAGGAGGAGTCTTCTCGAATTATCGGCCATTAGTCATCAATAATCAACCAG
TTGTCCAGTCGATCCCTCTTAATGCACCATCGGCTCAGCCGACGGCACCATCACCAGCTCCTACACCTGCCGCACCACTT
TCGGCTCTAGGCCAATTAGTTAATCCCCGATTGTTGGTGAGAGAACAACCACAGCACAGTGGACAGAATGTGAATCGGCT
AACCCAAGACCAGGTTGCATCTATGTTCTTACCTCCTCAACATGCCATTGATCCAACCCAGCAACAGCCGATTCAGCAAA
CACCGCCAAGGCAGCAGGTTGTGCAGCCGATTCAACAAACATCCCCAGTCCAACAGGTTGTGCAACCAATTCAGCAGACA
CCACAAAGACGGCAGGTTTTGCAGCCGGTTCAACAGACGCCATTAAGGCAACAGGTGGTTCAGCCGATTCAGCAGCAAGG
CTCAATGAATGCATCGGCTGGGTTTGCGATACCTGGTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18275.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis