Browse Element(s) Details


OsAffx.18275.1.S1_at

Description gb:NM_195699.1
DB_XREF= gi:37532757
TID=OsAffx.18275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1780011/11hypothetical protein
LOC_Os03g319862/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein
LOC_Os10g17840NANA10+8696460..8697957retrotransposon protein, putative, unclassified
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18275.1.S1_at--722--1711Chr10:8675028..8675052 (25 bp)
ACCAGGAGGAGTCTTCTCGAATTAT
LOC_Os10g17800
OsAffx.18275.1.S1_at--325--8011Chr10:8675032..8675056 (25 bp)
GGAGGAGTCTTCTCGAATTATCGGC
LOC_Os10g17800
OsAffx.18275.1.S1_at--927--8031Chr10:8675035..8675059 (25 bp)
GGAGTCTTCTCGAATTATCGGCCAT
LOC_Os10g17800
OsAffx.18275.1.S1_at--1104--1232Chr10:8675079..8675103 (25 bp)
AGTTGTCCAGTCGATCCCTCTTAAT
LOC_Os10g17800
OsAffx.18275.1.S1_at--314--8712Chr10:8675082..8675106 (25 bp)
TGTCCAGTCGATCCCTCTTAATGCA
LOC_Os10g17800
OsAffx.18275.1.S1_at--633--1691Chr10:8675154..8675178 (25 bp)
ACCACTTTCGGCTCTAGGCCAATTA
LOC_Os10g17800
OsAffx.18275.1.S1_at--977--3671Chr10:8675158..8675182 (25 bp)
CTTTCGGCTCTAGGCCAATTAGTTA
LOC_Os10g17800
OsAffx.18275.1.S1_at--337--4712Chr10:8675497..8675521 (25 bp)
GCTGGGTTTGCGATACCTGGTTGCC
LOC_Os10g17800
OsAffx.18275.1.S1_at--726--8631Chr10:8675499..8675523 (25 bp)
TGGGTTTGCGATACCTGGTTGCCGC
LOC_Os10g17800
OsAffx.18275.1.S1_at--464--6851Chr10:8675502..8675526 (25 bp)
GTTTGCGATACCTGGTTGCCGCGCC
LOC_Os10g17800
OsAffx.18275.1.S1_at--467--4631Chr10:8675506..8675530 (25 bp)
GCGATACCTGGTTGCCGCGCCCGGA
LOC_Os10g17800
Target Sequence 
ACCAGGAGGAGTCTTCTCGAATTATCGGCCATTAGTCATCAATAATCAACCAGTTGTCCAGTCGATCCCTCTTAATGCAC
CATCGGCTCAGCCGACGGCACCATCACCAGCTCCTACACCTGCCGCACCACTTTCGGCTCTAGGCCAATTAGTTAATCCC
CGATTGTTGGTGAGAGAACAACCACAGCACAGTGGACAGAATGTGAATCGGCTAACCCAAGACCAGGTTGCATCTATGTT
CTTACCTCCTCAACATGCCATTGATCCAACCCAGCAACAGCCGATTCAGCAAACACCGCCAAGGCAGCAGGTTGTGCAGC
CGATTCAACAAACATCCCCAGTCCAACAGGTTGTGCAACCAATTCAGCAGACACCACAAAGACGGCAGGTTTTGCAGCCG
GTTCAACAGACGCCATTAAGGCAACAGGTGGTTCAGCCGATTCAGCAGCAAGGCTCAATGAATGCATCGGCTGGGTTTGC
GATACCTGGTTGCCGCGCCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis