Browse Element(s) Details


Os.31929.3.S1_x_at

Description gb:NM_193252.1
DB_XREF= gi:34913587
GEN=P0014E04.7
TID=Os.31929.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31929 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to polyprotein (P0014E04.7), mRNA.
PROD=similar to polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g121409/11hypothetical protein
LOC_Os08g121108/11retrotransposon protein, putative, unclassified
LOC_Os10g119543/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g268002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g331422/11hypothetical protein
LOC_Os12g139902/11retrotransposon protein, putative, unclassified
LOC_Os01g274302/11hypothetical protein
LOC_Os10g178102/11hypothetical protein
LOC_Os04g485801/11hypothetical protein
LOC_Os03g393101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12100NANA8+7118963..7119559hypothetical protein
LOC_Os08g12110Os.24831.3.S1_s_at11/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.1.S1_x_at10/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.3.S1_x_at9/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.31929.3.S1_x_at8/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.31929.2.S1_x_at4/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.4.S1_x_at3/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.53142.1.S1_at3/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110OsAffx.1651.1.S1_x_at1/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110OsAffx.1651.1.S1_at1/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12120OsAffx.1383.1.S1_at1/118+7128741..7133542retrotransposon protein, putative, unclassified
LOC_Os08g12130OsAffx.22699.1.S1_x_at4/118+7137046..7143203retrotransposon protein, putative, unclassified, expressed
LOC_Os08g12140Os.31929.3.S1_x_at9/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.31929.2.S1_x_at3/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.53142.1.S1_at2/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_at1/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_x_at1/118+7144239..7151460hypothetical protein
LOC_Os08g12150NANA8+7156090..7156338hypothetical protein
LOC_Os08g12160Os.52923.1.S1_at11/118+7159129..7160206expressed protein
LOC_Os08g12170NANA8+7161315..7161978hypothetical protein
LOC_Os08g12180NANA8+7163905..7167061hypothetical protein
LOC_Os08g12190Os.27691.2.S1_x_at2/118+7168777..7171408retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31929.3.S1_x_at--730--939204Chr12:6011503..6011527 (25 bp)
TCGTCGTTCCCGGTCGTCGTGGCGT
NONE
Os.31929.3.S1_x_at--341--719108Chr12:20385689..20385713 (25 bp)
GTCCGTCGTCCGCGTTCGTCAAGCG
NONE
Os.31929.3.S1_x_at--102--671132Chr12:16774018..16774042 (25 bp)
GTTCGTCTCCGTTGTGCCCGTCTGT
NONE
Os.31929.3.S1_x_at--261--415227Chr12:6011728..6011752 (25 bp)
CGCGTGGTGGTAAGGATCCGTCCTC
NONE
Os.31929.3.S1_x_at--254--77381Chr12:20363155..20363179 (25 bp)
GGTGGTAAGGATCCGTCCTCTCGCT
NONE
Os.31929.3.S1_x_at--1131--177260Chr12:16798693..16798715 (23 bp)
ACCGGTGTCGGTAGTCGTTCACGCT
NONE
Os.31929.3.S1_x_at--846--743138Chr12:16798697..16799162 (25 bp)
GTGTCGGTAGTCGTTCACGCTTGTA
NONE
Os.31929.3.S1_x_at--27--911139Chr12:6011832..6012297 (25 bp)
TCGGTAGTCGTTCACGCTTGTAGCT
NONE
Os.31929.3.S1_x_at--714--785117Chr12:6011834..6012299 (25 bp)
GGTAGTCGTTCACGCTTGTAGCTTT
NONE
Os.31929.3.S1_x_at--569--115117Chr12:6011837..6012302 (25 bp)
AGTCGTTCACGCTTGTAGCTTTGCT
NONE
Os.31929.3.S1_x_at--844--363121Chr12:7957385..7957409 (25 bp)
CTTCGCGTAGCTTTCGTCGTTCCGG
NONE
Target Sequence 
TCGTCGTTCCCGGTCGTCGTGGCGTTCGTCCCTCCGTCGAGCCGTTCTCGTCCGTCGTCCGCGTTCGTCAAGCGAGCCGC
TGCAGCCCCGTCCTCGTCTCCGCCCTCGGCTCCGCGTCGTCAAGCCCCGTGCCGGCCGCGTCTCGCCTTCGTCCAAGGAT
CGCCGCCGAAGCCGTCCCCTCGCCGTTCGTCTCCGTTGTGCCCGTCTGTCTCCGCCGCGCCCGTTCGTCGTTGTCGTTCC
CACGCCTCGTCGCGTGGTGGTAAGGATCCGTCCTCTCGCTTCCCCGCCCTCGTCCTTTCGGCGTCGCCCCGTACCCGTTG
TGCGGTCGTCGACCCCGGTACCCGTGTACCGGTGTCGGTAGTCGTTCACGCTTGTAGCTTTGCTTGTGTGCTTCGCGTAG
CTTTCGTCGTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31929.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis