Browse Element(s) Details


Os.52923.1.S1_at

Description gb:AK069940.1
DB_XREF= gi:32979964
TID=Os.52923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038L08, full insert sequence.
FL= gb:AK069940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1216011/11expressed protein
LOC_Os08g126001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12130OsAffx.22699.1.S1_x_at4/118+7137046..7143203retrotransposon protein, putative, unclassified, expressed
LOC_Os08g12140Os.31929.3.S1_x_at9/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.31929.2.S1_x_at3/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.53142.1.S1_at2/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_at1/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_x_at1/118+7144239..7151460hypothetical protein
LOC_Os08g12150NANA8+7156090..7156338hypothetical protein
LOC_Os08g12160Os.52923.1.S1_at11/118+7159129..7160206expressed protein
LOC_Os08g12170NANA8+7161315..7161978hypothetical protein
LOC_Os08g12180NANA8+7163905..7167061hypothetical protein
LOC_Os08g12190Os.27691.2.S1_x_at2/118+7168777..7171408retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12199NANA8+7176539..7176799NA
LOC_Os08g12210OsAffx.447.1.S1_at2/118+7184432..7188982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12210Os.46715.1.S1_x_at1/118+7184432..7188982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12210Os.52609.1.S1_at1/118+7184432..7188982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12210OsAffx.22947.2.S1_x_at1/118+7184432..7188982retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52923.1.S1_at--563--4531Chr08:7159659..7159683 (25 bp)
GCCGCCGGAAATGGCAAGCGCAGCA
LOC_Os08g12160
Os.52923.1.S1_at--1049--2911Chr08:7159635..7159659 (25 bp)
AAGGAGGATCTGGAGAATGCGCAAA
LOC_Os08g12160
Os.52923.1.S1_at--437--8531Chr08:7159595..7159619 (25 bp)
TGGAGAAACCCTACAACGGTGGGAT
LOC_Os08g12160
Os.52923.1.S1_at--413--1691Chr08:7159583..7159607 (25 bp)
ACAACGGTGGGATCGGGAAAGCATC
LOC_Os08g12160
Os.52923.1.S1_at--374--2351Chr08:7159566..7159590 (25 bp)
AAAGCATCCGGTTGCGAGATAGGTT
LOC_Os08g12160
Os.52923.1.S1_at--1048--5771Chr08:7159549..7159573 (25 bp)
GATAGGTTACCTGTTCACTTATAGC
LOC_Os08g12160
Os.52923.1.S1_at--255--10491Chr08:7159536..7159560 (25 bp)
TTCACTTATAGCGATGATCTCCCCG
LOC_Os08g12160
Os.52923.1.S1_at--487--4551Chr08:7159512..7159536 (25 bp)
GCCCAGAAAACCCTTGGATATACTT
LOC_Os08g12160
Os.52923.1.S1_at--911--231Chr08:7159495..7159519 (25 bp)
ATATACTTTCGACACAGCTAGCTCC
LOC_Os08g12160
Os.52923.1.S1_at--521--1573Chr08:7467053..7467074 (22 bp)
AGCTAGCTCCCTCATCAATCACATA
NONE
Os.52923.1.S1_at--1002--232Chr08:7467102..7467126 (25 bp)
ATATATAGCCTTCCATGCATGCTCT
NONE
Target Sequence 
GCCGCCGGAAATGGCAAGCGCAGCAAGGAGGATCTGGAGAATGCGCAAAAGTGGATCAAAGGGGTGGAGAAACCCTACAA
CGGTGGGATCGGGAAAGCATCCGGTTGCGAGATAGGTTACCTGTTCACTTATAGCGATGATCTCCCCGCCCAGAAAACCC
TTGGATATACTTTCGACACAGCTAGCTCCCTCATCAATCACATAAAGCTTTAATAATCTAGCTATATATATAGCCTTCCA
TGCATGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis