Browse Element(s) Details


OsAffx.1383.1.S1_at

Description gb:NM_187390.1
DB_XREF= gi:34901865
GEN=OJ1197_D06.18
TID=OsAffx.1383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OJ1197_D06.18), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3153011/11retrotransposon protein, putative, unclassified
LOC_Os08g121201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31550Os.53555.1.S1_at11/117+18726294..18731858expressed protein
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1383.1.S1_at--769--10852Chr07:18712971..18712995 (25 bp)
TTGGCTGCAAGGATACGCTCCTAAA
LOC_Os07g31530
OsAffx.1383.1.S1_at--431--1411Chr07:18712947..18712971 (25 bp)
AGACATAGCGCCGACATTATTCAAA
LOC_Os07g31530
OsAffx.1383.1.S1_at--1096--4631Chr07:18712900..18712924 (25 bp)
GCGTAGCCTTTGAGCTGCACAACAA
LOC_Os07g31530
OsAffx.1383.1.S1_at--828--693Chr06:9328848..9328872 (25 bp)
ATGAGCTGGTGCACCTAGGCAGTAA
NONE
OsAffx.1383.1.S1_at--1159--6553Chr06:9328888..9328911 (24 bp)
GATTACACCCCAATTCTTTGGATAG
NONE
OsAffx.1383.1.S1_at--74--6873Chr06:9328972..9328996 (25 bp)
GTTTGTAGGATCAGTTGCCAACACA
NONE
OsAffx.1383.1.S1_at--248--3553Chr06:9329036..9329060 (25 bp)
CATCGGTTCTTTGGCTGGTTAATTT
NONE
OsAffx.1383.1.S1_at--1083--3733Chr06:9329075..9329099 (25 bp)
CTCACAGCTGAAAACCTCCTTTTAA
NONE
OsAffx.1383.1.S1_at--54--8452Chr06:9329106..9329130 (25 bp)
GGCCATGCGATTGGATTTGCAGCTT
NONE
OsAffx.1383.1.S1_at--844--2474Chr06:9329347..9329366 (20 bp)
AACACGGTGTGGCTTGAGCGCAATC
NONE
OsAffx.1383.1.S1_at--1079--9196Chr08:7132496..7132520 (25 bp)
TGCCACCCAAGTAGCTTTCTTAGTA
LOC_Os08g12120
Target Sequence 
TTGGCTGCAAGGATACGCTCCTAAAGACATAGCGCCGACATTATTCAAATTAGCAAAGAGGAAAACAAACTGCGTAGCCT
TTGAGCTGCACAACAATCACTGGATCACTTCCTTAAGAACAATCACTTCAATAAATGAGATCAATGAGCTGGTGCACCTA
GGCAGTAAGCTGCATGAGATCAGATTACACCCCAATTCTTTGGATAGTATCACGTGGAAGTGGACTAATCATGGTGAATA
CTCTGCAAAAAGCGCTTATGAAATGCAGTTTGTAGGATCAGTTGCCAACACAAATTTTATGCCACTTTGGAAAGCTGAAG
CGGAACCTAAGCATCGGTTCTTTGGCTGGTTAATTTTACATCAAAGAACTCTCACAGCTGAAAACCTCCTTTTAAGACAT
TGGCCATGCGATTGGATTTGCAGCTTATGTACAGATGCTTTTGAGGACGCAAACCATTTGGCAAAGGAGTGCAGTTTCAC
TAACACGGTGTGGCTTGAGCGCAATCGAAGAATTTTCCATCAAAAGCAACTAAGTGCCACCCAAGTAGCTTTCTTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis