Browse Element(s) Details


Os.11234.1.S1_at

Description gb:NM_187384.1
DB_XREF= gi:34901853
GEN=OJ1197_D06.12
TID=Os.11234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11234 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor protein kinase (OJ1197_D06.12), mRNA.
PROD=putative receptor protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3150011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein
LOC_Os07g31490Os.11511.2.S1_x_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.1.S1_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.2.S1_at10/117+18682814..18686196expressed protein
LOC_Os07g31490Os.52782.1.S1_at1/117+18682814..18686196expressed protein
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11234.1.S1_at--205--4851Chr07:18687044..18687157 (25 bp)
GCTACATGGCCCCAGAGTGCGGATA
LOC_Os07g31500
Os.11234.1.S1_at--108--9871Chr07:18687042..18687155 (25 bp)
TACATGGCCCCAGAGTGCGGATACA
LOC_Os07g31500
Os.11234.1.S1_at--180--2111Chr07:18687041..18687154 (25 bp)
ACATGGCCCCAGAGTGCGGATACAG
LOC_Os07g31500
Os.11234.1.S1_at--846--871Chr07:18687039..18687152 (25 bp)
ATGGCCCCAGAGTGCGGATACAGCT
LOC_Os07g31500
Os.11234.1.S1_at--308--8471Chr07:18687038..18687151 (25 bp)
TGGCCCCAGAGTGCGGATACAGCTT
LOC_Os07g31500
Os.11234.1.S1_at--329--4211Chr07:18687035..18687056 (22 bp)
CCCCAGAGTGCGGATACAGCTTGAA
LOC_Os07g31500
Os.11234.1.S1_at--738--3411Chr07:18687032..18687056 (25 bp)
CAGAGTGCGGATACAGCTTGAAGAC
LOC_Os07g31500
Os.11234.1.S1_at--798--1131Chr07:18687029..18687053 (25 bp)
AGTGCGGATACAGCTTGAAGACGAC
LOC_Os07g31500
Os.11234.1.S1_at--1042--3811Chr07:18686949..18686973 (25 bp)
CTGACGCCGACGGACAAGGCGTTCG
LOC_Os07g31500
Os.11234.1.S1_at--459--4511Chr07:18686827..18686851 (25 bp)
GCCGCGGGAGGAGTCGTCGATGACG
LOC_Os07g31500
Os.11234.1.S1_at--317--8271Chr07:18686741..18686765 (25 bp)
GGCAGGTGTCCGACCTGCTGCTCCA
LOC_Os07g31500
Target Sequence 
GCTACATGGCCCCAGAGTGCGGATACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATG
GAGCTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGGTGGGTGCAGTCGAGGGT
GGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCGCTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGA
CGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTG
CTGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis