Browse Element(s) Details


Os.11511.2.S1_x_at

Description gb:NM_187383.1
DB_XREF= gi:34901851
GEN=P0005E02.19
TID=Os.11511.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU068835(C50696)~unknown protein (P0005E02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU068835(C50696)~unknown protein (P0005E02.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein
LOC_Os07g31490Os.11511.2.S1_x_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.1.S1_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.2.S1_at10/117+18682814..18686196expressed protein
LOC_Os07g31490Os.52782.1.S1_at1/117+18682814..18686196expressed protein
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11511.2.S1_x_at--13--4371Chr07:18682840..18682864 (25 bp)
CCACGCCGCCTCGAGAAAGAGGAGA
LOC_Os07g31490
Os.11511.2.S1_x_at--274--8651Chr07:18682922..18682946 (25 bp)
TGGGCCTCGGCACCCAGATGTACTC
LOC_Os07g31490
Os.11511.2.S1_x_at--1019--4471Chr07:18683402..18683426 (25 bp)
GCCTGGGTGCGGTGTTCGTCAACCA
LOC_Os07g31490
Os.11511.2.S1_x_at--971--4671Chr07:18683410..18683434 (25 bp)
GCGGTGTTCGTCAACCAGCTGGTGA
LOC_Os07g31490
Os.11511.2.S1_x_at--789--1471Chr07:18683486..18683510 (25 bp)
AGCAAGCCAACGAGCGGCGTTACTT
LOC_Os07g31490
Os.11511.2.S1_x_at--772--3911Chr07:18683998..18684022 (25 bp)
CTGGCCAAGCAGAAATACCCGGATT
LOC_Os07g31490
Os.11511.2.S1_x_at--1034--6531Chr07:18684019..18684043 (25 bp)
GATTTATTGATAACCAGCAGATAGT
LOC_Os07g31490
Os.11511.2.S1_x_at--1153--1511Chr07:18684034..18684058 (25 bp)
AGCAGATAGTCTCCATCTCCGCAGA
LOC_Os07g31490
Os.11511.2.S1_x_at--995--3131Chr07:18684066..18684090 (25 bp)
AATTCTTGGGTAACCATTTATCACG
LOC_Os07g31490
Os.11511.2.S1_x_at--639--7811Chr07:18684074..18684098 (25 bp)
GGTAACCATTTATCACGTACTTGAG
LOC_Os07g31490
Os.11511.2.S1_x_at--1050--5491Chr07:18684098..18684122 (25 bp)
GAACAAACAACGAAGATTGCATTTT
LOC_Os07g31490
Target Sequence 
CCACGCCGCCTCGAGAAAGAGGAGAAATCGAGAGCGCGGCGGCCGAAGATGCCGGCGACGCNNNCGATCATCGGCGCCCT
CCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCNNNNNNNNNNNNNATCCCTGG
GAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCT
CGACAAGATGCTTGAGCGTGCNAAGCAAGCCAACGAGCGGCGTTACTTTGATAGCNACGGAGGTATGGAAGAACTGGAAC
NTCCTCCTGGCCAAGCAGAAATACCCGGATTTATTGATAACCAGCAGATAGTCTCCATCTCCGCAGANAGTNATAATTCT
TGGGTAACCATTTATCACGTACTTGAGAACAAACAACGAAGATTGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11511.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis