Browse Element(s) Details


Os.11511.1.S1_at

Description gb:AK059124.1
DB_XREF= gi:32969142
TID=Os.11511.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU068835(C50696)~unknown protein (P0005E02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F09, full insert sequence.
FL= gb:AK119800.1 gb:AK059124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein
LOC_Os07g31490Os.11511.2.S1_x_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.1.S1_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.2.S1_at10/117+18682814..18686196expressed protein
LOC_Os07g31490Os.52782.1.S1_at1/117+18682814..18686196expressed protein
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11511.1.S1_at--652--9871Chr07:18682969..18683389 (25 bp)
TACATGCGCCATCCCTGGGAGCATG
LOC_Os07g31490
Os.11511.1.S1_at--384--10531Chr07:18685908..18685932 (25 bp)
TTCAGTTTGTATGGTCTGTACACAT
LOC_Os07g31490
Os.11511.1.S1_at--1101--3871Chr07:18685923..18685947 (25 bp)
CTGTACACATGGTTTGGACCATCCA
LOC_Os07g31490
Os.11511.1.S1_at--433--3531Chr07:18685942..18685966 (25 bp)
CATCCATCTGTAGTCGCCGTATCAA
LOC_Os07g31490
Os.11511.1.S1_at--820--351Chr07:18685962..18685986 (25 bp)
ATCAACACCCGGCTCGCAATTTCAA
LOC_Os07g31490
Os.11511.1.S1_at--538--5191Chr07:18685977..18686001 (25 bp)
GCAATTTCAACTGCGGTGCTGTAAT
LOC_Os07g31490
Os.11511.1.S1_at--638--371Chr07:18686044..18686068 (25 bp)
AGAAACCAATTATCGAACTCGGCTC
LOC_Os07g31490
Os.11511.1.S1_at--333--5471Chr07:18686058..18686082 (25 bp)
GAACTCGGCTCTGATGGTATACCTT
LOC_Os07g31490
Os.11511.1.S1_at--648--6251Chr07:18686070..18686094 (25 bp)
GATGGTATACCTTCCCTGATGCAAA
LOC_Os07g31490
Os.11511.1.S1_at--803--10031Chr07:18686104..18686128 (25 bp)
TAGTACCAACGGTAGCGCTTTTACA
LOC_Os07g31490
Os.11511.1.S1_at--28--4891Chr07:18686143..18686167 (25 bp)
GCTTACCCATATGTTGTGAGGTTCT
LOC_Os07g31490
Target Sequence 
TACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGA
GAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATG
ATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACC
ATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGG
ATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAANNNANTGT
TTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTNTGCTTACCCATATGTTGTGAGGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis