Browse Element(s) Details


OsAffx.28697.1.S1_at

Description tigr:9635.m03085
TID=OsAffx.28697.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3147011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein
LOC_Os07g31490Os.11511.2.S1_x_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.1.S1_at11/117+18682814..18686196expressed protein
LOC_Os07g31490Os.11511.2.S1_at10/117+18682814..18686196expressed protein
LOC_Os07g31490Os.52782.1.S1_at1/117+18682814..18686196expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28697.1.S1_at--254--4891Chr07:18657536..18657560 (25 bp)
GCTTCAGGGATCAGAACGCCGGCGT
LOC_Os07g31470
OsAffx.28697.1.S1_at--148--4471Chr07:18657501..18657525 (25 bp)
GCCTCCATGGACTTCATGAACGGCT
LOC_Os07g31470
OsAffx.28697.1.S1_at--166--851Chr07:18657495..18657519 (25 bp)
ATGGACTTCATGAACGGCTCCTCCT
LOC_Os07g31470
OsAffx.28697.1.S1_at--1044--9411Chr07:18657471..18657495 (25 bp)
TCGTCCTCTTCCATGGAGCAGCTCG
LOC_Os07g31470
OsAffx.28697.1.S1_at--343--8271Chr07:18657435..18657459 (25 bp)
GGCATGTCGTCGAACGGCAACGGCA
LOC_Os07g31470
OsAffx.28697.1.S1_at--301--8011Chr07:18657320..18657344 (25 bp)
GGATGGATCAGGTGGCGCAGCAGCA
LOC_Os07g31470
OsAffx.28697.1.S1_at--1117--3211Chr07:18657285..18657309 (25 bp)
CAAGTGCTGGTGCAGGATGCGGCCG
LOC_Os07g31470
OsAffx.28697.1.S1_at--515--4231Chr07:18657249..18657273 (25 bp)
CCGACGACGCTGATGATGCACGGCG
LOC_Os07g31470
OsAffx.28697.1.S1_at--8--5751Chr07:18657136..18657160 (25 bp)
GACGGCGTTCGATCTAGACCTGATG
LOC_Os07g31470
OsAffx.28697.1.S1_at--775--4631Chr07:18657132..18657156 (25 bp)
GCGTTCGATCTAGACCTGATGGTGG
LOC_Os07g31470
OsAffx.28697.1.S1_at--710--6091Chr07:18657108..18657132 (25 bp)
GAGTCGTGCGGGATGTTCTGCGGCG
LOC_Os07g31470
Target Sequence 
GCTTCAGGGATCAGAACGCCGGCGTCCACGGCGCCGCCTCCATGGACTTCATGAACGGCTCCTCCTCGTCCTCTTCCATG
GAGCAGCTCGGCGGCGGCGGCGGCATGTCGTCGAACGGCAACGGCAGCTTCAGCGCGAGCATGGCGGCGTTCATGGACGA
GGAGGCGGCAATGTGGGCCACCGCCGTCGCGCCGCCGGGCATGGGCGGCCTCGCCGGGATGGATCAGGTGGCGCAGCAGC
AGCAGCAGCAGCAAGTGCTGGTGCAGGATGCGGCCGTGGGCGTTGCGCCGACGACGCTGATGATGCACGGCGGCGGCGCC
GCCACCGCCGGTGCAATGGTGGTGGACAAGAGCGTGGAGATGGTGGACGTCTCGTCGGCGGTGTACGGCGGCGCGACGGC
GACGGCGTTCGATCTAGACCTGATGGTGGAGTCGTGCGGGATGTTCTGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis