Browse Element(s) Details


Os.10905.2.S1_at

Description gb:AK100332.1
DB_XREF= gi:32985541
TID=Os.10905.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc-finger helicase (P0005E02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080K24, full insert sequence.
FL= gb:AK100332.1 gb:AK060483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g314501/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10905.2.S1_at--1003--9631Chr07:18624147..18624171 (25 bp)
TCAGGTGCGGCAAATCCAGTTTCGG
LOC_Os07g31450
Os.10905.2.S1_at--572--171Chr07:18624038..18624062 (25 bp)
ATTTTTCTTCCATTTAGCGCTGGGA
NONE
Os.10905.2.S1_at--180--3671Chr07:18624007..18624031 (25 bp)
CTTTCCCAATGGTTTCCAGTGTGTG
NONE
Os.10905.2.S1_at--203--10171Chr07:18623978..18624002 (25 bp)
TATCAGGTACCTGCCTTTTGTGTTT
NONE
Os.10905.2.S1_at--370--6851Chr07:18623957..18623981 (25 bp)
GTTTGTATGCTTAGCCCAGAATCCA
NONE
Os.10905.2.S1_at--707--1171Chr07:18623909..18623933 (25 bp)
AGTAGTTTAGCCCTCTAGTCCAGCG
NONE
Os.10905.2.S1_at--1068--7591Chr07:18623885..18623909 (25 bp)
GGGAGCAAACTCTCGAAAGCCTCTA
NONE
Os.10905.2.S1_at--748--10371Chr07:18623843..18623867 (25 bp)
TTTTCAGACATGGTACCTTGGACAT
NONE
Os.10905.2.S1_at--1156--8811Chr07:18623789..18623813 (25 bp)
TGATTTAGATAGTCCGTTTACCACC
NONE
Os.10905.2.S1_at--246--3031Chr07:18623693..18623717 (25 bp)
AATCCTTGTGTTCTTCAGTTTTTGT
NONE
Os.10905.2.S1_at--665--6591Chr07:18623670..18623694 (25 bp)
GTTGTTCGAATTATCCATTTCCTTG
NONE
Target Sequence 
TCAGGTGCGGCAAATCCAGTTTCGGCAGCTCAGACAGCTGACGAAGATAAGGTGGACGAGATGATCACAGATGAGCATTA
GAACTTTTGAGCAATGAGCTCAAATGCTTATTTTTCTTCCATTTAGCGCTGGGATTTTCCCTTTCCCAATGGTTTCCAGT
GTGTGGAGGTATCAGGTACCTGCCTTTTGTGTTTGTATGCTTAGCCCAGAATCCAGATAGAGTAAAAATCCAGGGACTAG
TAGTTTAGCCCTCTAGTCCAGCGGGAGCAAACTCTCGAAAGCCTCTATATACATGAAGTGTATATTTTCAGACATGGTAC
CTTGGACATGGACAAGTATTCATTTATTTATGCGTGTATGATTTAGATAGTCCGTTTACCACCCCCACTCCCAGGGTTAC
AATTTAGAAATACTACATGTTTGTCTATGGAAAAAAAANTCCTGGTTACCTTTTTAATCCTTGTGTTCTTCAGTTTTTGT
TGTTCGAATTATCCATTTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10905.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis