Browse Element(s) Details


Os.27566.1.S1_s_at

Description gb:AK068275.1
DB_XREF= gi:32978293
TID=Os.27566.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PNGase (peptide N-glycanase) (P0005E02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013139F24, full insert sequence.
FL= gb:AK068275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3146011/11Transglutaminase-like superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed
LOC_Os07g31470OsAffx.28697.1.S1_at11/117+18657061..18658623Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g31480OsAffx.28698.1.S1_at11/117+18671178..18672325hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27566.1.S1_s_at--94--331Chr07:18651424..18651448 (25 bp)
ATACGTGGCTGTGACCATGGCTATT
LOC_Os07g31460
Os.27566.1.S1_s_at--1005--8271Chr07:18651442..18651466 (25 bp)
GGCTATTATTTGCAACCAACGCAGT
LOC_Os07g31460
Os.27566.1.S1_s_at--1139--2591Chr07:18651459..18651483 (25 bp)
AACGCAGTTGCATTATTTATTGGAA
LOC_Os07g31460
Os.27566.1.S1_s_at--727--6111Chr07:18651515..18651539 (25 bp)
GAGTGATTATCCCTTCAATTCTTGA
LOC_Os07g31460
Os.27566.1.S1_s_at--325--3611Chr07:18651535..18651559 (25 bp)
CTTGAGAAGACTCTTTATATGCCCC
LOC_Os07g31460
Os.27566.1.S1_s_at--1138--4171Chr07:18651558..18651582 (25 bp)
CCCATTGCCTTAAGTCTCTAGTTGT
LOC_Os07g31460
Os.27566.1.S1_s_at--1145--10491Chr07:18651567..18651591 (25 bp)
TTAAGTCTCTAGTTGTTTCCTACAA
LOC_Os07g31460
Os.27566.1.S1_s_at--237--10751Chr07:18651579..18651603 (25 bp)
TTGTTTCCTACAACTCAAGAGTACT
LOC_Os07g31460
Os.27566.1.S1_s_at--84--6191Chr07:18651622..18651646 (25 bp)
GAGGAGCTATCTAAGTGTTGTGTGA
LOC_Os07g31460
Os.27566.1.S1_s_at--388--271Chr07:18651660..18651684 (25 bp)
ATATGTCAGTTTGTACCAGTATCTA
LOC_Os07g31460
Os.27566.1.S1_s_at--210--9831Chr07:18651695..18651719 (25 bp)
TAAAAGCCTTACCAAATGTTCATTT
LOC_Os07g31460
Target Sequence 
ATACGTGGCTGTGACCATGGCTATTATTTGCAACCAACGCAGTTGCATTATTTATTGGAAGATTGTAAAATGTGAAATTC
AACTATGGAAGGAGTGATTATCCCTTCAATTCTTGAGAAGACTCTTTATATGCCCCCATTGCCTTAAGTCTCTAGTTGTT
TCCTACAACTCAAGAGTACTGCAGAATAAGGAAGCACAGAGGAGCTATCTAAGTGTTGTGTGATATATAGACATGTATAT
GTCAGTTTGTACCAGTATCTAATTGTTTAATTAAAAGCCTTACCAAATGTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27566.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis