Browse Element(s) Details


Os.10927.1.S1_x_at

Description gb:AK067389.1
DB_XREF= gi:32977407
TID=Os.10927.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU068498(C30372)~similar to Arabidopsis thaliana chromosome3, At3g12940~unknown protein (OJ1457_D07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101J10, full insert sequence.
FL= gb:AK067389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3144011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10927.1.S1_x_at--349--5431Chr07:18621084..18621108 (25 bp)
GAACCATCACCACATGTTGAACAGG
LOC_Os07g31440
Os.10927.1.S1_x_at--1092--9231Chr07:18621968..18621992 (25 bp)
TCCTTCCAAAAGACTTCGCCTAGAG
LOC_Os07g31440
Os.10927.1.S1_x_at--369--5891Chr07:18622011..18622035 (25 bp)
GAGCGTGTCCAGGATATTGCGGATA
LOC_Os07g31440
Os.10927.1.S1_x_at--198--6791Chr07:18622094..18622118 (25 bp)
GTTAGACCGTCCATGTGAGAACATC
LOC_Os07g31440
Os.10927.1.S1_x_at--957--7671Chr07:18622144..18622168 (25 bp)
GGGTTCCATTTGTCCATCCACATGA
LOC_Os07g31440
Os.10927.1.S1_x_at--855--2691Chr07:18622185..18622209 (25 bp)
AAGCTCATGTTTCTGGAAGCCTATG
LOC_Os07g31440
Os.10927.1.S1_x_at--1035--5411Chr07:18622200..18622224 (25 bp)
GAAGCCTATGAACCCGGATGGACTG
LOC_Os07g31440
Os.10927.1.S1_x_at--184--5731Chr07:18622220..18622242 (23 bp)
GACTGCCTCCCAGCAAGATTTAGGT
LOC_Os07g31440
Os.10927.1.S1_x_at--1079--6811Chr07:18622639..18622663 (25 bp)
GTTTAATGATCTCACCTACATGCTG
LOC_Os07g31440
Os.10927.1.S1_x_at--453--1151Chr07:18622733..18622757 (25 bp)
AGTCTGACACCAAACGCCGTTGAGA
LOC_Os07g31440
Os.10927.1.S1_x_at--1107--7051Chr07:18622783..18622807 (25 bp)
GTAACCTACTTACTGCTGCGATTGT
LOC_Os07g31440
Target Sequence 
GAACCATCACCACATGTTGAACAGGAAGCATCGTATAACTTTGTGATGAAGAGAAAGAAGGAAGGTAGAAAAACAAAGGC
ACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAG
GCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGA
ACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGA
AGCCTATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAG
GAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAA
ACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis