Browse Element(s) Details


Os.37746.1.S1_at

Description gb:AK064235.1
DB_XREF= gi:32974253
TID=Os.37746.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phi-1(phosphate-induced protein 1) (OJ1457_D07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H11, full insert sequence.
FL= gb:AK064235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g314309/11phosphate-responsive 1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460Os.27566.1.S1_s_at11/117+18641388..18651889Transglutaminase-like superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37746.1.S1_at--424--4091Chr07:18617357..18617381 (25 bp)
CGACGAACCCGCTGGTGAACGCGTG
LOC_Os07g31430
Os.37746.1.S1_at--292--8611Chr07:18617540..18617564 (25 bp)
TGGTGCAGTGGCTCTGGAACCCCGT
LOC_Os07g31430
Os.37746.1.S1_at--216--7671Chr07:18617622..18617646 (25 bp)
GGGATTCTTGCGAGGATGGATCACT
LOC_Os07g31430
Os.37746.1.S1_at--235--6251Chr07:18617636..18617660 (25 bp)
GATGGATCACTCGATGCCATTGCGC
LOC_Os07g31430
Os.37746.1.S1_at--261--1171Chr07:18617670..18617694 (25 bp)
AGTAGAAACGGAAGACTCCATGGGC
LOC_Os07g31430
Os.37746.1.S1_at--137--3191Chr07:18617728..18617752 (25 bp)
CAATTTGATCTGATCCCTTTCTTGA
LOC_Os07g31430
Os.37746.1.S1_at--562--6391Chr07:18617780..18617804 (25 bp)
GATCGGGAGAAATTCTTTGGGTTCT
LOC_Os07g31430
Os.37746.1.S1_at--4--111Chr07:18617807..18617831 (25 bp)
ATTCTGATCGATCTGTAGGAGTGAG
LOC_Os07g31430
Os.37746.1.S1_at--507--4951Chr07:18617906..18617930 (25 bp)
GCATTAGTAGAATTCCAGCTTGTTT
LOC_Os07g31430
Os.37746.1.S1_at--370--1551Chr07:18617922..18617946 (25 bp)
AGCTTGTTTCAAGCTTCCTCTTGCT
NONE
Os.37746.1.S1_at--502--2711Chr07:18617932..18617956 (25 bp)
AAGCTTCCTCTTGCTTGCTCAAGCA
NONE
Target Sequence 
CGACGAACCCGCTGGTGAACGCGTGGTACGCCGGNGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGC
GTGTACGGCGACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCCTACAACGTCAA
CGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTCCGCGGCGCGTGCTACGGCCCCAACTCCAGCA
GCTGACCGCCGCCGCCATGGCCGCCGGGATTCTTGCGAGGATGGATCACTCGATGCCATTGCGCNNAATGGCTAGTAGAA
ACGGAAGACTCCATGGGCNGNTTCAGAGCTCGACACCTNNAAACGTCNNACCAATTTGATCTGATCCCTTTCTTGATCAG
AGATTCNGGGTGGGTTTTGTTCAGATCGGGAGAAATTCTTTGGGTTCTGAATTCTGATCGATCTGTAGGAGTGAGAAGCA
TGCAATTTTTTTCATTTCAATTTATTTTATTTGCAGCATAAATTATGATCGATTTAGGGGAATAGAATTGCATTAGTAGA
ATTCCAGCTTGTTTCAAGCTTCCTCTTGCTTGCTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis