Browse Element(s) Details


Os.15042.2.S1_x_at

Description gb:NM_187362.1
DB_XREF= gi:34901809
GEN=OJ1457_D07.17
TID=Os.15042.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15042 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative NAD-dependent malic enzyme 62 KDA isoform, mitochondrial precursor (NAD-ME) (OJ1457_D07.17), mRNA.
PROD=putative NAD-dependent malic enzyme 62 KDAisoform, mitochondrial precursor (NAD-ME)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3138011/11NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005739cellular_componentmitochondrion
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15042.2.S1_x_at--1019--7351Chr07:18591661..18591685 (25 bp)
GTGAAGCCTGATGTCATACTTGGAT
LOC_Os07g31380
Os.15042.2.S1_x_at--458--9492Chr07:18591688..18591712 (25 bp)
TCTGCTGTTGGTGGTTTGTTCTCAA
LOC_Os07g31380
Os.15042.2.S1_x_at--422--2331Chr07:18592137..18592161 (25 bp)
AAAGACTCATCCTCTTCAAGACCAG
LOC_Os07g31380
Os.15042.2.S1_x_at--1098--9711Chr07:18592152..18592176 (25 bp)
TCAAGACCAGCAATTTTCGCGATGT
LOC_Os07g31380
Os.15042.2.S1_x_at--643--6431Chr07:18592324..18592348 (25 bp)
GATCATCTTTGCCAGTGGAAGCCCA
LOC_Os07g31380
Os.15042.2.S1_x_at--153--2511Chr07:18592630..18592758 (25 bp)
AACATGTATCTCTTTCCTGGAATAG
LOC_Os07g31380
Os.15042.2.S1_x_at--345--10871Chr07:18592762..18592786 (25 bp)
TTGGAACCCTTCTATCTGGAGCACG
LOC_Os07g31380
Os.15042.2.S1_x_at--212--5951Chr07:18592780..18592804 (25 bp)
GAGCACGGGTTATCTCAGACGGAAT
LOC_Os07g31380
Os.15042.2.S1_x_at--1094--1391Chr07:18592796..18592820 (25 bp)
AGACGGAATGCTTCAGGCTGCAGCT
LOC_Os07g31380
Os.15042.2.S1_x_at--729--3391Chr07:18592816..18592938 (25 bp)
CAGCTGAACGCTTGGCTTCGTATAT
LOC_Os07g31380
Os.15042.2.S1_x_at--462--10051Chr07:18592965..18592986 (22 bp)
TAGTATACCCTCCAATCTCCAGAAT
LOC_Os07g31380
Target Sequence 
GTGAAGCCTGATGTCATACTTGGATTATCTGCTGTTGGTGGTTTGTTCTCAAAGGAGGTTTTAGAAGCATTAAAAGACTC
ATCCTCTTCAAGACCAGCAATTTTCGCGATGTCAAATCCAACTAAGAATGCTGAATGTACACCTGAAGAAGCCTTTTCAA
TTCTTGGTGAAAAGATCATCTTTGCCAGTGGAAGCCCATTTAGTGATGTGGATCTTGGTAATGGAAAGATTGGCCACTCA
AATCAAGGGAATAACATGTATCTCTTTCCTGGAATAGGGCTTGGAACCCTTCTATCTGGAGCACGGGTTATCTCAGACGG
AATGCTTCAGGCTGCAGCTGAACGCTTGGCTTCGTATATGAAAGAAGAGGAAGTTCTCGAAGGGATAGTATACCCTCCAA
TCTCCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15042.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis