Browse Element(s) Details


Os.18837.1.A1_a_at

Description gb:AK060293.1
DB_XREF= gi:32970311
TID=Os.18837.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putaitive UPF1 (OJ1457_D07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E02, full insert sequence.
FL= gb:AK060293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3134011/11Regulator of nonsense transcripts 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009616biological_processvirus induced gene silencing
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18837.1.A1_a_at--614--2471Chr07:18562930..18562954 (25 bp)
AACACATCTCTTTCTTGTCATGGTA
LOC_Os07g31340
Os.18837.1.A1_a_at--956--1331Chr07:18562978..18563002 (25 bp)
AGAGGTGGCAACTTGTGCACTGAGA
LOC_Os07g31340
Os.18837.1.A1_a_at--1152--8891Chr07:18562998..18563022 (25 bp)
TGAGAGATGCTGACGACGCTACCCA
LOC_Os07g31340
Os.18837.1.A1_a_at--715--3091Chr07:18563075..18563099 (25 bp)
AATACTTCAGGATTGGCTGGCGCCG
LOC_Os07g31340
Os.18837.1.A1_a_at--637--2831Chr07:18563102..18563126 (25 bp)
AAGTCTAAGGTGCAGCCGCTATCGC
LOC_Os07g31340
Os.18837.1.A1_a_at--867--2371Chr07:18563147..18563171 (25 bp)
AAACGCTTGCAGATTGGCTTTGTAT
LOC_Os07g31340
Os.18837.1.A1_a_at--1012--5111Chr07:18563213..18563237 (25 bp)
GCACATGGCCATTATATTTATCTGA
LOC_Os07g31340
Os.18837.1.A1_a_at--516--8871Chr07:18563287..18563311 (25 bp)
TGATGTTTGGTGATCTTGCCTGAAA
LOC_Os07g31340
Os.18837.1.A1_a_at--152--6251Chr07:18563339..18563363 (25 bp)
GATGGAGATCGCGTGATTTTCTTTT
LOC_Os07g31340
Os.18837.1.A1_a_at--1140--3871Chr07:18563389..18563413 (25 bp)
CTGGCTGGATGCTGGTAAACCCGTG
LOC_Os07g31340
Os.18837.1.A1_a_at--821--8631Chr07:18563415..18563439 (25 bp)
TGGGTTTTCTGCGTGGTTGATTCCA
LOC_Os07g31340
Target Sequence 
AACACATCTCTTTCTTGTCATGGTAGTTCACAGTGGGGCTTGACAACAAGAGGTGGCAACTTGTGCACTGAGAGATGCTG
ACGACGCTACCCACATCGCTTCACCTGTATAGAAGGCAAAATGGAGCTTATAGTGGTACGATGTCAATACTTCAGGATTG
GCTGGCGCCGTGAAGTCTAAGGTGCAGCCGCTATCGCCTGCCTCCATGGTACCACGAAAACGCTTGCAGATTGGCTTTGT
ATAGGGGTATAGATGGGGGGTGGCCAGCCCTTTCAGATCTCTCGCACATGGCCATTATATTTATCTGAACATTATGTATG
CTTTCTTTATAGTTTTTGATATTTAGGTTCACAGAAATGATGTTTGGTGATCTTGCCTGAAAGAACGAATGCTAGAGCTT
GTAGTCATTGATGGAGATCGCGTGATTTTCTTTTTTGGATCAGCTGTCATTTTAGGGAGCTGGCTGGATGCTGGTAAACC
CGTGATGGGTTTTCTGCGTGGTTGATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18837.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis