Browse Element(s) Details


Os.25527.1.S1_at

Description gb:CA766934
DB_XREF= gi:27549074
DB_XREF=AF53-Rpf_13_F24_T7_084.ab1
CLONE=C0004752
TID=Os.25527.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1457_D07.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3132011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25527.1.S1_at--792--5791Chr07:18545101..18545125 (25 bp)
GACGAAGTTCTCCAGTCCATACAGA
LOC_Os07g31320
Os.25527.1.S1_at--1087--10071Chr07:18545062..18545086 (25 bp)
TAGGTTCTTGGTTGTTCTCCACGAA
LOC_Os07g31320
Os.25527.1.S1_at--760--3811Chr07:18545046..18545070 (25 bp)
CTCCACGAACTGCTTGGTTTCATAT
LOC_Os07g31320
Os.25527.1.S1_at--341--5251Chr07:18544533..18545045 (25 bp)
GAATCTTCATTGCATAGTTCCATTG
LOC_Os07g31320
Os.25527.1.S1_at--825--6691Chr07:18544517..18544541 (25 bp)
GTTCCATTGTATTCCTGTACGTTTA
LOC_Os07g31320
Os.25527.1.S1_at--1049--6071Chr07:18544480..18544504 (25 bp)
GAGTATTCAACTCCGTTGTGTTCCT
LOC_Os07g31320
Os.25527.1.S1_at--193--3831Chr07:18544460..18544481 (22 bp)
CTGCCCGTATCGAGGATTCCAGATT
LOC_Os07g31320
Os.25527.1.S1_at--1078--7871Chr07:18544350..18544374 (25 bp)
GGTTATTCATCCACAGTTTATCCTT
LOC_Os07g31320
Os.25527.1.S1_at--3--6831Chr07:18544335..18544359 (25 bp)
GTTTATCCTTATGGTCTTGCAAATC
LOC_Os07g31320
Os.25527.1.S1_at--204--231Chr07:18544139..18544163 (25 bp)
ATATTCTTTTCCCTGCTTGAAGTGA
LOC_Os07g31320
Os.25527.1.S1_at--475--6651Chr07:18544112..18544136 (25 bp)
GTTGCAGTATTCATCTTTGTTCGTT
LOC_Os07g31320
Target Sequence 
GACGAAGTTCTCCAGTCCATACAGAAGCAGAAGCAGAAGTAGGTTCTTGGTTGTTCTCCACGAACTGCTTGGTTTCATAT
GAATCTTCATTGCATAGTTCCATTGTATTCCTGTACGTTTATTCGAGGATCCAGAGTATTCAACTCCGTTGTGTTCCTGC
CCGTATCGAGGATTCCAGATTTAATTGGTTATTCATCCACAGTTTATCCTTATGGTCTTGCAAATCCAACATGGAAGAAT
TAAACATCTTACAGGTTTGCAGTGAAGACACAAGAAGACTGGGGAAAATACATTTAACAGCTTGAAATAATTGAAATTTT
ATTATATTCTTTTCCCTGCTTGAAGTGATTGTTGCAGTATTCATCTTTGTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis