Browse Element(s) Details


OsAffx.16505.2.S1_x_at

Description tigr:9635.m03064
TID=OsAffx.16505.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3129011/11Protein kinase APK1B, chloroplast precursor, putative
LOC_Os05g171401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g201801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16505.2.S1_x_at--1154--5691Chr07:18529534..18529558 (25 bp)
GACTACGTGGAGACGGGCCGCCTCA
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--225--4171Chr07:18529552..18529576 (25 bp)
CGCCTCACGGCGAGGAGCGACGTCT
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--496--5851Chr07:18529648..18529672 (25 bp)
GACCAGAAGCTCGTCGACTGGGCGC
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--165--8251Chr07:18529687..18529711 (25 bp)
GGCACCCGGTGGTTCTCGAGGCTCC
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--652--4691Chr07:18529848..18529872 (25 bp)
GCGGCACGGCGAGCTGGATGGTCCC
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--1110--9251Chr07:18529933..18529957 (25 bp)
TCCTCCCCGGAGGCGAAGAAGGCAG
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--1129--2734Chr07:18529948..18529972 (25 bp)
AAGAAGGCAGCGACGGCGAAGCGGC
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--910--5391Chr07:18529965..18529989 (25 bp)
GAAGCGGCGGCGAATGGCGCACCTG
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--199--911Chr07:18530032..18530056 (25 bp)
AGGCTGGTGCACATGAAGATGACGA
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--1015--8991Chr07:18530045..18530069 (25 bp)
TGAAGATGACGAAGGCAGCAGCTAC
LOC_Os07g31290
OsAffx.16505.2.S1_x_at--524--6311Chr07:18530049..18530073 (25 bp)
GATGACGAAGGCAGCAGCTACATGC
LOC_Os07g31290
Target Sequence 
GACTACGTGGAGACGGGCCGCCTCACGGCGAGGAGCGACGTCTGGAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACCGG
CCACCGCGCCTTCGACCGGAGCCGGCCACGCCCCGACCAGAAGCTCGTCGACTGGGCGCGCCGCCACCCCGCGGGCACCC
GGTGGTTCTCGAGGCTCCCCGACCCGCGACTCGCGGGGAGGTACTCGCACCGCGCCGCGCAGGACGTCGCGGCGCTCGCG
TGGAGGTGCCTCGCCGACCGCGCCGGGGAGCGCCCGTCCATGGCGGAGGCGGCGCGGGCCCTGGAGCGCGCGGCGCGGCA
CGGCGAGCTGGATGGTCCCCCCGAGCCGCCGGAGGAGGGATCGCCCCCGCCTCCTCGCTGCCACGCCGGCTCCGGTTCCT
CCTCCCCGGAGGCGAAGAAGGCAGCGACGGCGAAGCGGCGGCGAATGGCGCACCTGGCCAAGCTGGCGGCTGGCGCGAGC
GCGGCGCCGGCGGCGCGGAGGCTGGTGCACATGAAGATGACGAAGGCAGCAGCTACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16505.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis