Browse Element(s) Details


Os.18837.3.S1_x_at

Description gb:NM_187354.1
DB_XREF= gi:34901793
GEN=OJ1457_D07.9
TID=Os.18837.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18837 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putaitive UPF1 (OJ1457_D07.9), mRNA.
PROD=putaitive UPF1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3134010/11Regulator of nonsense transcripts 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009616biological_processvirus induced gene silencing
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18837.3.S1_x_at--1141--1551Chr07:18561629..18561653 (25 bp)
AGCTTTTAACTTTCCTGGCCTGGAG
LOC_Os07g31340
Os.18837.3.S1_x_at--1111--8531Chr07:18561649..18561673 (25 bp)
TGGAGAATCCGAGCAGTCAGCCTTC
LOC_Os07g31340
Os.18837.3.S1_x_at--82--1171Chr07:18561663..18561687 (25 bp)
AGTCAGCCTTCTGGTGGAGGTCCAA
LOC_Os07g31340
Os.18837.3.S1_x_at--816--2131Chr07:18561786..18561808 (23 bp)
ACAGATGCCTGTCCAAGGTCTCAGT
LOC_Os07g31340
Os.18837.3.S1_x_at--353--1031Chr07:18561799..18561823 (25 bp)
AGGTCTCAGTCAAACATTCCGCGAT
LOC_Os07g31340
Os.18837.3.S1_x_at--1050--71Chr07:18561814..18561838 (25 bp)
ATTCCGCGATGGGTTTTCCATTGGT
LOC_Os07g31340
Os.18837.3.S1_x_at--236--8632Chr07:18561835..18561942 (25 bp)
TGGTGGGATGTCTCAGGACTTCTTT
LOC_Os07g31340
Os.18837.3.S1_x_at--351--6211Chr07:18562180..18562204 (25 bp)
GAGGCTATGGTGTTGACTACTCTCA
LOC_Os07g31340
Os.18837.3.S1_x_at--594--2911Chr07:18562204..18562228 (25 bp)
AAGGACCCCAATCTGGATATCCTGG
LOC_Os07g31340
Os.18837.3.S1_x_at--1037--5671Chr07:18562284..18562406 (25 bp)
GACATTGTCTCTCAGGATCACATGG
LOC_Os07g31340
Os.18837.3.S1_x_at--467--7791NONE
GGTCTTCAGTCTCAGAAACGATGGT
NONE
Target Sequence 
AGCTTTTAACTTTCCTGGCCTGGAGAATCCGAGCAGTCAGCCTTCTGGTGGAGGTCCAATGTCCCAGACTGGATTGATGA
CACAGATGCCTGTCCAAGGTCTCAGTCAAACATTCCGCGATGGGTTTTCCATTGGTGGGATGTCTCAGGACTTCTTTGGA
GATGATTTCAAGAGCCAAGGATCTCATGTGGCATACAACATTGCTGATTTTTCCACTCAGGCTTCTCAAGGAGGCTATGG
TGTTGACTACTCTCAAGGACCCCAATCTGGATATCCTGGGAATTATTTGAACCAAAATGCACACCCAGGGTATTCCCATA
TGGGTGCAGCAAATGACATTGTCTCTCAGGATCACATGGCCCATGGTTCACATGGAATGTTTACACAAGCGGGATACAAT
GACTCTTCACAAGATGAGTCATCACAGATGCATTTTGGAATGGCTGGTCCTGGTCTTCAGTCTCAGAAACGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18837.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis