Browse Element(s) Details


OsAffx.7328.1.S1_s_at

Description gb:NM_187357.1
DB_XREF= gi:34901799
GEN=OJ1457_D07.12
TID=OsAffx.7328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1457_D07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3136011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7328.1.S1_s_at--686--3534Chr11:21698642..21698666 (25 bp)
CATCCACGGTTGGAAAAGCGCGGGA
NONE
OsAffx.7328.1.S1_s_at--751--1592Chr11:14570211..14570235 (25 bp)
AGCTGCCCGACGTGGTCTTGGTCCG
NONE
OsAffx.7328.1.S1_s_at--564--1911Chr07:18574522..18574546 (25 bp)
ACGTGGTCTTGGTCCGTCGGCACCT
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--487--1131Chr07:18574488..18574512 (25 bp)
AGTGCGGCAGTGCTTATCCCCGGCC
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--821--5792Chr11:21698796..21698820 (25 bp)
GACGCGTTTGCCGTGCCTGGAGTCT
NONE
OsAffx.7328.1.S1_s_at--360--2011Chr07:18574356..18574380 (25 bp)
ACTCTCCACCTGAACTCGATGAAAA
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--610--5476Chr03:31839153..31839176 (24 bp)
GAACTCGATGAAAAACATGGCCCAG
NONE
OsAffx.7328.1.S1_s_at--217--2411Chr07:18574333..18574357 (25 bp)
AAACATGGCCCAGTGACCGAGTCAT
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--1012--8911Chr07:18574320..18574344 (25 bp)
TGACCGAGTCATGCGATGGCGTCAA
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--412--8471Chr07:18574304..18574328 (25 bp)
TGGCGTCAAGGCACTGGATGGTCCA
LOC_Os07g31360
OsAffx.7328.1.S1_s_at--932--1951Chr07:18574292..18574316 (25 bp)
ACTGGATGGTCCAAGTGCTGCTGCG
LOC_Os07g31360
Target Sequence 
CATCCACGGTTGGAAAAGCGCGGGAGCTGCCCGACGTGGTCTTGGTCCGTCGGCACCTCCCCTGCCCAGTGCGGCAGTGC
TTATCCCCGGCCGGTGCGGCTCCTCCCTGCCTACCGTGTCCTCCTTCAGGTGCCCTCCTCTACCCGACGCTCCTCCCCGG
CCGACGCGTTTGCCGTGCCTGGAGTCTCCTCCAGCCTGCACTCTCCACCTGAACTCGATGAAAAACATGGCCCAGTGACC
GAGTCATGCGATGGCGTCAAGGCACTGGATGGTCCAAGTGCTGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7328.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis