Browse Element(s) Details


OsAffx.16506.1.S1_at

Description tigr:9635.m03074
TID=OsAffx.16506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GTP binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3137011/11Ras-related protein Rab-6A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005624cellular_componentmembrane fraction
GO:0005739cellular_componentmitochondrion
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16506.1.S1_at--539--6052Chr05:5978833..5978861 (23 bp)
GAGATTTTGTTCACCATATGCTTTA
NONE
OsAffx.16506.1.S1_at--404--7751Chr07:18578994..18579018 (25 bp)
GGTGTACTGGTGTTTACCAAACATT
LOC_Os07g31370
OsAffx.16506.1.S1_at--921--10191Chr07:18578869..18578988 (25 bp)
TATTTGTCTCATTTGGGTTCCCAAC
LOC_Os07g31370
OsAffx.16506.1.S1_at--757--7672Chr02:27975756..27975860 (24 bp)
GGGTTCCCAACCAATATTTCTATAT
NONE
OsAffx.16506.1.S1_at--607--1491Chr07:18578693..18578717 (25 bp)
AGCACAAAACTCACTACCTTATAAT
LOC_Os07g31370
OsAffx.16506.1.S1_at--754--9731Chr07:18578388..18578409 (22 bp)
TCAAGGCACCACTTGTTGTGGCATT
LOC_Os07g31370
OsAffx.16506.1.S1_at--281--7531Chr07:18578371..18578395 (25 bp)
GTGGCATTGGCGATTAAGATACATC
LOC_Os07g31370
OsAffx.16506.1.S1_at--285--4971Chr07:18578338..18578362 (25 bp)
GCATCAGTGCCAGTTCTTAAAGCCA
LOC_Os07g31370
OsAffx.16506.1.S1_at--949--3631Chr07:18578327..18578347 (21 bp)
CTTAAAGCCAATCTTGTTTTGTCAT
LOC_Os07g31370
OsAffx.16506.1.S1_at--147--6811Chr07:18578029..18578332 (25 bp)
GTTTTGTCATGTACTTTCTCATGCA
LOC_Os07g31370
OsAffx.16506.1.S1_at--235--9531Chr07:18578013..18578037 (25 bp)
TCTCATGCAACAGGCAAGTCTCCAT
LOC_Os07g31370
Target Sequence 
GAGATTTTGTTCACCATATGCTTTATGTGTTACTGTTAGTGGTGTACTGGTGTTTACCAAACATTTCATTTATTTGTCTC
ATTTGGGTTCCCAACCAATATTTCTATATGATGTCAAATTTATTTCTCTAGATGTCTTTGATTTTATGGTGTTTACCAAA
CAATGCAATCTTATTATTTATTACGCGATGATTGAACAGTACGATAATTTAGCACAAAACTCACTACCTTATAATTTTAG
TTGGATCAAGCTCAAGGCACCACTTGTTGTGGCATTGGCGATTAAGATACATCAATTTGTGGCATCAGTGCCAGTTCTTA
AAGCCAATCTTGTTTTGTCATGTACTTTCTCATGCAACAGGCAAGTCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis