Browse Element(s) Details


Os.15042.1.S1_a_at

Description gb:AK061706.1
DB_XREF= gi:32971724
TID=Os.15042.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAD-dependent malic enzyme 62 KDA isoform, mitochondrial precursor (NAD-ME) (OJ1457_D07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E11, full insert sequence.
FL= gb:AK061706.1 gb:AK064866.1 gb:AK065801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3138011/11NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005739cellular_componentmitochondrion
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15042.1.S1_a_at--263--5351Chr07:18592949..18592973 (25 bp)
GAAGTTCTCGAAGGGATAGTATACC
LOC_Os07g31380
Os.15042.1.S1_a_at--371--291Chr07:18592964..18592986 (23 bp)
ATAGTATACCCTCCAATCTCCAGAA
LOC_Os07g31380
Os.15042.1.S1_a_at--722--4191Chr07:18592972..18593071 (25 bp)
CCCTCCAATCTCCAGAATACGTGAT
LOC_Os07g31380
Os.15042.1.S1_a_at--538--471Chr07:18592979..18593078 (25 bp)
ATCTCCAGAATACGTGATATCACCA
LOC_Os07g31380
Os.15042.1.S1_a_at--8--5051Chr07:18593114..18593138 (25 bp)
GCAGAGGATCTAGCTGAGGGATATC
LOC_Os07g31380
Os.15042.1.S1_a_at--87--9551Chr07:18593122..18593146 (25 bp)
TCTAGCTGAGGGATATCGTGACATG
LOC_Os07g31380
Os.15042.1.S1_a_at--648--8951Chr07:18593140..18593164 (25 bp)
TGACATGGATGCACGTGAACTTGCA
LOC_Os07g31380
Os.15042.1.S1_a_at--1128--3991Chr07:18593153..18593177 (25 bp)
CGTGAACTTGCAAGACTCAGTGAGG
LOC_Os07g31380
Os.15042.1.S1_a_at--878--6911Chr07:18593276..18593300 (25 bp)
GTATGTCCAGCAGAACATGTGGAGT
LOC_Os07g31380
Os.15042.1.S1_a_at--351--2111Chr07:18593290..18593314 (25 bp)
ACATGTGGAGTCCAGTTTATCCAAC
LOC_Os07g31380
Os.15042.1.S1_a_at--119--6091Chr07:18593297..18593321 (25 bp)
GAGTCCAGTTTATCCAACAATAGTG
LOC_Os07g31380
Target Sequence 
GAAGTTCTCGAAGGGATAGTATACCCTCCAATCTCCAGAATACGTGATATCACCAAGGAGGTGGCAGCAGCAGTTGTGAA
GGAAGCTGTTGCAGAGGATCTAGCTGAGGGATATCGTGACATGGATGCACGTGAACTTGCAAGACTCAGTGAGGAAGAAA
CAGTTGAGTATGTCCAGCAGAACATGTGGAGTCCAGTTTATCCAACAATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15042.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis