Browse Element(s) Details


Os.10451.2.S1_at

Description gb:NM_187343.1
DB_XREF= gi:34901771
GEN=OJ1058_B11.15
TID=Os.10451.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_B11.15 (OJ1058_B11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1058_B11.15 (OJ1058_B11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3126011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10451.2.S1_at--368--5651Chr07:18503147..18503171 (25 bp)
GACAGAGCATCGTGCTTGGCTCATA
LOC_Os07g31260
Os.10451.2.S1_at--832--491Chr07:18503139..18503163 (25 bp)
ATCGTGCTTGGCTCATAATGTCAGT
LOC_Os07g31260
Os.10451.2.S1_at--1000--8311Chr07:18503130..18503154 (25 bp)
GGCTCATAATGTCAGTGTCTCTTCA
LOC_Os07g31260
Os.10451.2.S1_at--1043--2971Chr07:18503123..18503147 (25 bp)
AATGTCAGTGTCTCTTCATCAACGT
LOC_Os07g31260
Os.10451.2.S1_at--163--9651Chr07:18503119..18503143 (25 bp)
TCAGTGTCTCTTCATCAACGTTCAA
LOC_Os07g31260
Os.10451.2.S1_at--634--7451Chr07:18503116..18503140 (25 bp)
GTGTCTCTTCATCAACGTTCAAGAA
LOC_Os07g31260
Os.10451.2.S1_at--197--10511Chr07:18503099..18503123 (25 bp)
TTCAAGAAAACATTCCCTCTGTATT
LOC_Os07g31260
Os.10451.2.S1_at--1131--2391Chr07:18503092..18503116 (25 bp)
AAACATTCCCTCTGTATTTCTCATT
LOC_Os07g31260
Os.10451.2.S1_at--1020--91Chr07:18503088..18503112 (25 bp)
ATTCCCTCTGTATTTCTCATTGACA
LOC_Os07g31260
Os.10451.2.S1_at--883--6871Chr07:18503079..18503103 (25 bp)
GTATTTCTCATTGACATTTGTCCCA
LOC_Os07g31260
Os.10451.2.S1_at--907--9591Chr07:18503072..18503096 (25 bp)
TCATTGACATTTGTCCCATTTGTTG
LOC_Os07g31260
Target Sequence 
GACAGAGCATCGTGCTTGGCTCATAATGTCAGTGTCTCTTCATCAACGTTCAAGAAAACATTCCCTCTGTATTTCTCATT
GACATTTGTCCCATTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10451.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis