Browse Element(s) Details


Os.35935.2.S1_at

Description gb:NM_187342.1
DB_XREF= gi:34901769
GEN=OJ1058_B11.14
TID=Os.35935.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35935 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative wall-associated protein kinase (OJ1058_B11.14), mRNA.
PROD=putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3125011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31200OsAffx.28690.1.S1_at9/117+18473342..18474200hypothetical protein
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35935.2.S1_at--773--7531Chr07:18500226..18500250 (25 bp)
GTGGCAGAGTATTGAACATCCTTTC
LOC_Os07g31250
Os.35935.2.S1_at--76--3671Chr07:18500246..18500270 (25 bp)
CTTTCACTTCCTATGTACGTCTACA
LOC_Os07g31250
Os.35935.2.S1_at--538--4831Chr07:18500299..18500323 (25 bp)
GCTCACCTTCACTCATTTGACATGG
LOC_Os07g31250
Os.35935.2.S1_at--12--751Chr07:18500360..18500384 (25 bp)
ATGTTTTTTCTGGATCTAAGCTCGA
LOC_Os07g31250
Os.35935.2.S1_at--237--1411Chr07:18500392..18500416 (25 bp)
AGAACTAGTACATTTCCGGCAAAGA
LOC_Os07g31250
Os.35935.2.S1_at--552--7971Chr07:18500499..18500523 (25 bp)
GGATCCACACTTCCTAATAACTGGG
LOC_Os07g31250
Os.35935.2.S1_at--789--8651Chr07:18500520..18500544 (25 bp)
TGGGCTCATGACTAAGGAACACGAT
LOC_Os07g31250
Os.35935.2.S1_at--403--10271Chr07:18500641..18500665 (25 bp)
TTTGCTATATGCCATCATCTCGAGG
LOC_Os07g31250
Os.35935.2.S1_at--628--2531Chr07:18500675..18500699 (25 bp)
AACTAGCTTCGTGGTGTGTTGCACC
LOC_Os07g31250
Os.35935.2.S1_at--1022--8671Chr07:18500689..18500713 (25 bp)
TGTGTTGCACCCGAGGTTACAGAAA
LOC_Os07g31250
Os.35935.2.S1_at--798--4051Chr07:18500737..18500761 (25 bp)
CGATGCCTCCACGATATCTTGAAAG
LOC_Os07g31250
Target Sequence 
GTGGCAGAGTATTGAACATCCTTTCACTTCCTATGTACGTCTACAAATTGCTACTGATGCTGCAGAAGGCCTTGCTCACC
TTCACTCATTTGACATGGTTCATGGCGATGTCAGAACTGCCAATGTAATAGTGGATGTTTTTTCTGGATCTAAGCTCGAA
ATGCCTAGAACTAGTACATTTCCGGCAAAGATTGCTGGTTTTGGAACAACAAAGCTCCTTTCCTTGGACAAGGCTCAGTA
TGCAAGATTTCTAACAGAGAACATACATTACAAGGATCCACACTTCCTAATAACTGGGCTCATGACTAAGGAACACGATG
TGTATGGTTTTGGAGGGGTTCTTGTGGAGCTCTTCACAGGAAACAAGATTCAAATGCACGACATAAATACGGTAATTAAA
TATTTTGATAGCGTATTTGCTATATGCCATCATCTCGAGGAAATTAAGGAACTAGCTTCGTGGTGTGTTGCACCCGAGGT
TACAGAAAGGCCAACCATGGCCAAGGTAGTACGATGCCTCCACGATATCTTGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35935.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis